YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57164361, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	77	0.96
Transmembrane Helix	78	96	0.88
Non-Cytoplasmic	97	106	0.75
Transmembrane Helix	107	126	0.87
Cytoplasmic	127	155	0.84
Transmembrane Helix	156	180	0.75
Non-Cytoplasmic	181	187	0.73
Transmembrane Helix	188	207	0.94
Cytoplasmic	208	216	0.78
Transmembrane Helix	217	237	0.92
Non-Cytoplasmic	238	260	0.87
Transmembrane Helix	261	279	0.91
Cytoplasmic	280	301	0.87
Transmembrane Helix	302	324	0.91
Non-Cytoplasmic	325	368	0.92
Transmembrane Helix	369	392	0.73
Cytoplasmic	393	420	0.81
Transmembrane Helix	421	439	0.95
Non-Cytoplasmic	440	452	0.82
Transmembrane Helix	453	475	0.84
Cytoplasmic	476	486	0.74
Transmembrane Helix	487	506	0.94
Non-Cytoplasmic	507	514	0.81
Transmembrane Helix	515	540	0.84
Cytoplasmic	541	571	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVRGCPARQ PLSAQRVPES AVLMSGDTGT PNQGGTRYGS ISSPPSPGPQ QAPPGGTYLS  60
   61 EKIPIPDTES GAFSLRKLWA FTGPGFLMSI AFLDPGNIES DLQAGAVAGF KLLWVLLWAT 120
  121 VLGLLCQRLA ARLGVVTGKD LGEVCHLYYP KVPRTLLWLT IELAIVGSDM QEVIGTAIAF 180
  181 SLLSAGRIPL WGGVLITIVD TFFFLFLDNY GLRKLEAFFG FLITIMALTF GYEYVVARPA 240
  241 QGALLQGLFL PSCPGCGQPE LLQAVGIVGA IIMPHNIYLH SSLVKSREVD RSRRADIREA 300
  301 NMYFLIEATI ALSVSFFINL FVMAVFGQAF YKQTNQAAFN ICANSSLHDY ATIFPRDNLT 360
  361 VAVDIYQGGV ILGCLFGPAA LYIWAVGLLA AGQSSTMTGT YAGQFVMEGF LKLRWSRFAR 420
  421 VLLTRSCAIL PTVLLAVFRD LQDLSGLNHV LNVLQSLLLP FAVLPILTFT SMPALMQEFA 480
  481 NGLVSKIITS SIMVLVCAVN LYFVISYVPS LPHPAYFSLV ALLAAAYLGL TTYLVWTCLI 540
  541 TQGATRLAHS SHQRFLYGLP GEDQEEGRTS G