YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4102839
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.88
Transmembrane Helix	110	132	0.82
Non-Cytoplasmic	133	152	0.79
Transmembrane Helix	153	174	0.82
Cytoplasmic	175	195	0.94
Transmembrane Helix	196	218	0.92
Non-Cytoplasmic	219	225	0.82
Transmembrane Helix	226	246	0.92
Cytoplasmic	247	345	0.97
Transmembrane Helix	346	364	0.92
Non-Cytoplasmic	365	382	0.84
Transmembrane Helix	383	403	0.91
Cytoplasmic	404	423	0.90
Transmembrane Helix	424	446	0.87
Non-Cytoplasmic	447	471	0.91
Transmembrane Helix	472	493	0.88
Cytoplasmic	494	506	0.85
Transmembrane Helix	507	530	0.85
Non-Cytoplasmic	531	550	0.91
Transmembrane Helix	551	571	0.95
Cytoplasmic	572	580	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYLFSKNGG LLEDENSGLY TRDGSVDIKG NPVLKSETGN WRACPFILGN ECCERLAYYG  60
   61 IAANLVTYLT KKLHEGNVSA ARNVTTWQGT CYITPLIGAV LADAYWGRYW TIATFSTIYF 120
  121 IGMCTLTLSA SVPAFKPPQC VGSVCPSASP AQYAIFFFGL YLIALGTGGI KPCVSSFGAD 180
  181 QFDDTDPKER VKKGSFFNWF YFSINIGALI SSSLIVWIQE NAGWGLGFGI PAVFMGIAIA 240
  241 SFFFGTPLYR FQKPGGSPLT RMCQVLVAVF HKWNLSVPDD STLLYETPDK SSAIEGSRKL 300
  301 LHTDELRCLD KAAVVSDNEL TTGDYSNAWR LCTVTQVEEL KILIRMFPIW ATGIVFSAVY 360
  361 AQMSTMFVEQ GMVMDTAVGS FKIPAASLST FDTISVIVWV PVYDKILVPI ARRFTGIERG 420
  421 FSELQRMGIG LFLSMLCMSA AAIVEIRRLQ LARDLGLVDE AVSVPLSIFW QIPQYFILGA 480
  481 AEIFTFIGQL EFFYDQSPDA MRSLCSALSL LTTALGNYLS SFILTVVTSI TTRGGKPGWI 540
  541 PNNLNGGHLD YFFWLLAALS FFNLVIYVFL CQMYKSKKAS