YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13897556
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLAGRPSFY ASALIGTNAV AGWELYLLYR QWRSFFREEL PESHAGIVED EEFQKSQAYG  60
   61 RDKGAFAICC DVRDLILSNV AILIRLPART FDWVAKWLPV AAGSFTHCCA LTAATDVAST 120
  121 LMSLPFDYYK TFVIEEKHGF NKTSRKEFFK DAAKGLCLRV FLLHPLTTGL ILQVVWRFGD 180
  181 RFPLYLFLGA TGLAMAFTFL YPTLIQPLFN TYTPISEDSA LYKKISILAK SHQFPLEKLY 240
  241 QVDGSRRSSH SNAYVYGFWK NKRIVLYDTL IEQMEGDDDL ILSLLCHELG HWKHSHDIIL 300
  301 LGIGIAQLFC ISFGAKAVIF NPEIYEEFGF RQMNPFVEFT LFLSVVAEPL LTLFGYAFSL 360
  361 LSRQLEFQAD KFAVESGYGM SLRKGLLIMQ KTNKSEVSPD NLYAAMKYTH PPIAERVAAI 420
  421 DAEIKKST

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.79
Transmembrane Helix	8	27	0.88
Cytoplasmic	28	154	0.79
Transmembrane Helix	155	176	0.79
Non-Cytoplasmic	177	183	0.60
Transmembrane Helix	184	205	0.91
Cytoplasmic	206	297	0.73
Transmembrane Helix	298	320	0.91
Non-Cytoplasmic	321	338	0.68
Transmembrane Helix	339	360	0.91
Cytoplasmic	361	428	0.71