YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3983449
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.99
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	232	0.99
Transmembrane Helix	233	255	0.94
Cytoplasmic	256	266	0.89
Transmembrane Helix	267	287	0.94
Non-Cytoplasmic	288	316	0.90
Transmembrane Helix	317	340	0.86
Cytoplasmic	341	356	0.82
Transmembrane Helix	357	377	0.85
Non-Cytoplasmic	378	401	0.88
Transmembrane Helix	402	425	0.89
Cytoplasmic	426	443	0.94
Transmembrane Helix	444	468	0.88
Non-Cytoplasmic	469	497	0.96
Transmembrane Helix	498	518	0.91
Cytoplasmic	519	576	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPTQGTHW SALALCVLLL WSSVCGREHV CQEISVPLCR GIGYNYTYMP NQFNHDNQDE  60
   61 AGLEVHQFWP LVEIQCSPDL RFFLCSMYTP ICLEDYKKPL PPCRSVCERA KAGCAPLMRQ 120
  121 YGFPWPDRMR CDLLPVQGDP NTLCMDYNRT DATSSPAAPK TTSRPGKPFK RKNKSSPGSS 180
  181 SCEPECYCRA PMVPVHSDHH PLYNRVKTGQ IPNCAMPCHN PYLSQEERTF ATFWIGIWSV 240
  241 LCFLSTFATV ATFLIDIERF KYPERPIIFL SACYMFVSLG YIIRLIAGHE RVACNQNHEV 300
  301 DHIHYETTGP ALCTLVFLLI YFFGMASAIW WVILSFTWFL AAGLKWGNEA IARYSQYFHM 360
  361 AAWLIPSVKS ITVLALSSVD GDSIAGICYV GNQNLDNLRG FVLAPLVIYL FIGTIFLFAG 420
  421 FVSMFRIRSV IKQGGTKTDK LERLMVRIGV FTVLYTVVAI MIVACYVYEH HNREAWEIAH 480
  481 ACNCSSDKKA PKPDYAVFML KYLMCLLIGI TSGAWTWSSK TLDSWRALCT RCCCCRWATK 540
  541 GTSGSVYSDA SSGLTWRSGT ASSVLCPPKQ MPLSRV