YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9652184
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.95
Transmembrane Helix	28	48	0.85
Non-Cytoplasmic	49	70	0.80
Transmembrane Helix	71	90	0.96
Cytoplasmic	91	99	0.82
Transmembrane Helix	100	119	0.91
Non-Cytoplasmic	120	123	0.70
Transmembrane Helix	124	145	0.91
Cytoplasmic	146	154	0.85
Transmembrane Helix	155	177	0.87
Non-Cytoplasmic	178	185	0.84
Transmembrane Helix	186	207	0.92
Cytoplasmic	208	273	0.99
Transmembrane Helix	274	294	0.89
Non-Cytoplasmic	295	314	0.77
Transmembrane Helix	315	338	0.87
Cytoplasmic	339	345	0.95
Transmembrane Helix	346	369	0.90
Non-Cytoplasmic	370	454	0.96
Transmembrane Helix	455	479	0.86
Cytoplasmic	480	488	0.83
Transmembrane Helix	489	509	0.90
Non-Cytoplasmic	510	523	0.72
Transmembrane Helix	524	543	0.94
Cytoplasmic	544	581	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEGGVVKVD KTEFTECFRT VGKTPYIMRL AFSAGIGGLL FGYDTGVISG ALLYIKEDFK  60
   61 EVAQKTWLQE TIVAMAVAGA IVGAGLGGFL NDKFGRKPAM IVADILFLTG AIIMSVAPAP 120
  121 WVIIIGRIVV GLGVGMASMT APLYISETSP AKIRGALGAT NGLLITGGQF VSYLVNLGFT 180
  181 RVKGTWRWML GVAAVPAAIQ VVLMLTLPES PRWLYRQNKI SEAEEILGRI YPPEQVKEEM 240
  241 DSLKTSIENE MADRKAVGEG NAFVRAKRAW DNKVVRRGLI AGISVLVAQQ FVGINTVMYY 300
  301 SPTIIQLAGF ASNSTALALS LVTSGLNAVG SIVSMMFVDR FGRRRLMIIS MFAIITCLVV 360
  361 LSGLFYGAAQ AAPKISQLES SHFGANSTCP AFASATSPDR WNCMTCLKAS DCAFCSNSAS 420
  421 EFHPGACVAQ TSTMKNACLG EKRIYFTEGC PSKFGFMAII VLGLYIITYS PGMGTVPWIL 480
  481 NSEIYPLRYR GICGGIGAVT LWCANLIVSE TFLTLTEALG SSGTFLLYAG FSLIGLIVIF 540
  541 LLVPETKGLP IEDIEKMLEK GFWPSLCGGN KDKDNKEEQQ A