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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47220868
Protein type: Transmembrane
Type Confidence: 0.94
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AMANVVDTKL YDILGVSPSV SENELKKAYR KLAKEYHPDK NPNAGDKFKE ISFAYEVLSN  60
   61 PEKKELYDRY GEQGLREGGG CGPGMDDIFS HIFGGGLFGF MGGHGSRSRN GGRRKGEDML 120
  121 HPLKVSLEDL YNGKTTKLQL SKNVLCSTCN GQGGKTGAVQ KCAACRGRGM RVMIRQLAPG 180
  181 MVQQMQSVCT DCNGEGEVIS EKDRCKKCEG KKVVKEVKIL EVHVDKGMKH GQKITFGGEA 240
  241 DQAPGVEPGD IVLVLQEKDH EVGGPAQTTG CCLQARLAPT FKRDGNDLFI DHKIGLVEAL 300
  301 CGCQFLIKHL DGRQIVVKYP AGKVIEPGSV RMVRGEGMPQ YRNPFDKGDL YVKFDVQFPQ 360
  361 NNWISPEKLM ELEDILPSRP DPPIITADTE EVDLQDFDAS QSSSSKRREA YNDSSDEEGG 420
  421 HHGPGVQCAH HFWNFDLAES DGCSGDWLVL TPSWSLESRL CGSVLPPPFI STAHHVWLYF 480
  481 SSQSNSSGQA QGFRLSYIRG QLGQSFCMNG EFLCDNGKCL PQIWWCNGYD ECGDATDEKS 540
  541 CPAPSASSQP GFCPFGYLPC TEERSTRCLP SSLLCNGVPD CGDGSDELGC TNATCRHHLG 600
  601 NFYGSFASQE SSWPARSAVA ELRCSWVLDT QDPRPIVLQM ELWLGPDDSV LVYDSLEHRD 660
  661 EALIQAFWAY DNHRPVALES NSGRMSLLHR AHPHSSHHGF NATYQVAELA PGPWRFSTPG 720
  721 RGPRFSSLLP QVQGYCFPHE LPCGDNRACF SEHQRCDGYW HCPSGRDEEA CVRCLAGEFP 780
  781 CDKSSLDCYP ASERCNNQRR CPDGADEANC YECQPGNFHC GKTCIFEMWR CDGHEDCSDG 840
  841 SDEKDCLEAT PREVIAAALI GSLACSLMLV IALGCALRLC SLGSGEHRWA SGVLAPPPAL 900
  901 LAPEPALLCV SQRLRDPDES EGGGANPKGS PALLRSVNRP RSHPRPGRLS SLQSEPGFHV 960
  961 AESAAGHAPA APATPGASLH PSLLLAPPPS VDAANHRPRP GPSRLQAGPP SLPEHRGQRA1020
 1021 ALWRWGGGRG GCPRMLRHGG AAALLAPAHP LSSTLGAAGG ASASSSEPRP RPQQTPHGSG1080
 1081 S

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle