YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69280031, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENNRNLLIT IALSVVILTL WQVFYVNPRV DAQREAAQIE AQRAQETEEK LGTQGADIPA  60
   61 PGATPGSTAV PGSAIPRTQV TRQEALAGAE RVTIDTPRLA GTINLAGARL DDLLLKDYRV 120
  121 TVDKDSPNID LLGPAGLPEG YFVEVGYTGN ASTGAVPGPD TVWQLQEGST LSPGSPVTLS 180
  181 FTNDRGLTFL RTFAVDENYL FTITDTIRNA AGEPVEIRNY GRTTRFGQPK TAGIYILHEG 240
  241 FIGVLGEEGL REVDYSTAQE DGQVLPGKSA DGWLGITDKY WAVTMVPRAQ KDFEPRFAYF 300
  301 SDGRERYQAD YLTDPVTVAP GGEAKIETLV FAGAKEVHVV DAYETQHNIR QFELLIDWGW 360
  361 FYFITKPMFY LIDWLFRLLG NFGVAILATT VFVKLVFFPL ANKSYKSMAN MKKVQPALLE 420
  421 IREKYADDKM KQQQAMMELY KKEKINPLAG CWPILIQIPV FFALYKVLYV TIEMRHAPFF 480
  481 GWIQDLSAPD PTTIFNLFGL LPFDPSQVPV FGPFLMLGVW PIIMGITMFL QMRMNPTPPD 540
  541 PTQAMIFNWM PVIFTFMLAT FPAGLVIYWA WNNLLSIIQQ GVIMKRQGAK IELWDNMVNL 600
  601 FRRKPKPAE

Type	Start	End	Confidence
Cytoplasmic	1	6	0.45
Transmembrane Helix	7	25	0.62
Non-Cytoplasmic	26	377	0.78
Transmembrane Helix	378	398	0.90
Cytoplasmic	399	447	0.90
Transmembrane Helix	448	469	0.86
Non-Cytoplasmic	470	509	0.85
Transmembrane Helix	510	530	0.94
Cytoplasmic	531	546	0.83
Transmembrane Helix	547	571	0.88
Non-Cytoplasmic	572	609	0.90