YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3892191
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKVDGETASD SESRAESAPL PVSADDTPEV LNRALSNLSS RWKNWWVRGI LTLAMIAFFF  60
   61 IIIYLGPMVL MIIVMCVQIK CFHEIITIGY NVYHSYDLPW FRTLSWYFLL CVNYFFYGET 120
  121 VTDYFFTLVQ REEPLRILSK YHRFISFTLY LIGFCMFVLS LVKKHYRLQF YMFGWTHVTL 180
  181 LIVVTQSHLV IHNLFEGMIW FIVPISCVIC NDIMAYMFGF FFGRTPLIKL SPKKTWEGFI 240
  241 GGFFATVVFG LLLSYVMSGY RCFVCPVEYN NDTNSFTVDC EPSDLFRLQE YNIPGVIQSV 300
  301 IGWKTVRMYP FQIHSIALST FASLIGPFGG FFASGFKRAF KIKDFANTIP GHGGIMDRFD 360
  361 CQYLMATFVN VYIASFIRGP NPSKLIQQFL TLRPDQQLHI FNTLRSHLID KGMLTSTTED 420
  421 E

Type	Start	End	Confidence
Cytoplasmic	1	44	0.86
Transmembrane Helix	45	65	0.89
Non-Cytoplasmic	66	69	0.60
Transmembrane Helix	70	92	0.61
Cytoplasmic	93	99	0.61
Transmembrane Helix	100	118	0.76
Non-Cytoplasmic	119	143	0.74
Transmembrane Helix	144	162	0.95
Cytoplasmic	163	170	0.75
Transmembrane Helix	171	191	0.84
Non-Cytoplasmic	192	198	0.81
Transmembrane Helix	199	222	0.92
Cytoplasmic	223	237	0.85
Transmembrane Helix	238	257	0.93
Non-Cytoplasmic	258	312	0.93
Transmembrane Helix	313	333	0.93
Cytoplasmic	334	421	0.82