YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3885974
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAPHLGQA FSLCLCLCLC LVLATLPVAL GLANCPNGCE CDDDTLMVNC GEGTLDVLPI  60
   61 ALNPAIQRLV IKNNKLKTID SSMQFYAQLT FLDLSFNDML TIPERSFAYH AKLQELHLDH 120
  121 NKIGQVSNKT FLGLSTISVL NLRGNLIAEL EYRTFSPMVK LAELNLGXNR ISHIDPHALD 180
  181 GLDNLRVLYL DDNTLTTVPG ELTFQALHSL AELYLGTNSF MTIPGGAFQD LKGLTRLDLR 240
  241 GAGLHNISGD ALKGLVSLRF LDLSDNRLPA IPTAAFQRLG RLEQLNIGQN DFEVISSGAF 300
  301 SGLRELRHLE LTGAQRLRRV ESGAFSGNTN LEHLNLSSNK QLNELSSIAL GGLPHLSTVV 360
  361 LKANQLSSLD EGLVPWADLQ TLDLSENPFE CDCRLLWLRH LLVSRNASGQ YAPVICAYPT 420
  421 ALRDLPLAHL AEPLLGCAHG AASKQAIIGI LVVACAGLIT TLALVLYTCR HRIREMLKGH 480
  481 SALGRKEREY QKTFSDEEYM SRPPPGGGGV HPAAGGYPYI AGNSRMIPVT EL

Type	Start	End	Confidence
Signal Peptide	1	31	0.99
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	445	0.99
Transmembrane Helix	446	468	0.91
Cytoplasmic	469	532	0.95