YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23466815
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.42
Topology Confidence:	0.10
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKNIVLWIV VAVVMMTAYQ SFSGNSSNNA IDYTTFISDV ENNQVSATKF NEVGEIFVTK  60
   61 KDGSKYTTVL PTPLEDRKLL DDLIKSKVKI DGALPEQRGF LSQILISWFP MILLIGVWFF 120
  121 FMRQMQGGGG KAMSFGKSRA KMLTKEQIKT TFADVAGCDE AKEEVGEIVD FLRDPSKFQK 180
  181 LGGKIPKGIL MVGPPGTGKT LLAKAIAGEA QVPFFTISGS DFVEMFVGVG ASRVRDMFEQ 240
  241 AKKNAPCLIF IDEIDAVGRQ RGAGLGGGHD EREQTLNQML VEMDGFEGNE GVIVIAATNR 300
  301 PDVLDPALTR PGRFDRQVVV GLPDVRGREH ILKVHMRKVP VADDVDAMTL ARGTPGYSGA 360
  361 DLANLVNEAA LFAARTNKKL VTMLEFEKAK DKINMGPERR SMIMTDKVKE STAYHEAGHA 420
  421 IVGYLVPEHD PVHKVTIIPR GRALGVTFFL PEGDQVSISQ KQLESKLSTL YAGRLAEELI 480
  481 YGEENISTGA SNDIKVATNI ARNMVTQWGF SDKLGPILYS EDEGEVFLGR SMAKAKHMSD 540
  541 ETAHTIDEEV RSIVNRNYQR ARQILTDNMD ILHAMKDALV KYETIEEEQI KQLMNREPVV 600
  601 APPGWTNNE

Type	Start	End	Confidence
Signal Peptide	1	20	0.58
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	103	0.78
Transmembrane Helix	104	122	0.79
Cytoplasmic	123	213	0.61
Transmembrane Helix	214	228	0.10
Non-Cytoplasmic	229	609	0.53