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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149039001, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRSMLPLVI TLLLVIYSFV PTSLAERVGC DLQRVDSTRG EVTYTTSQVS EGCVAQVANA  60
   61 AHEVHVLFLN LSRRKSEVEL TLQASKQNGT ETREVFLVFI SNENVLVKLQ APEIPLHLVY 120
  121 NSSLEVFKGP KVNSTPLPSF TSKTQILDWA ATKGTITSIA ALDDPKSIVL RLGQDPKAPP 180
  181 FCFPEAQKDM GVTLEWQPRT QTPVQGCHLE GVTGHKEAYV LRIRSGSEAG PRTVTVTVKL 240
  241 SCTSGDAVLI LQGPPYVSWL IDTNHNMQIW TTGEYSIKIF PENNIKGFEL PDTPQGLIGE 300
  301 ARKLNASIVT FVEIPLTSDV SLTVSSCGGG LQTSPAPVVT TPPKDTCSPE LLMSLIQPKC 360
  361 GNDVMTLALN KKLVQTLQCT ITGLAFWDSS CQAKDQDGHL VLSSTYSSCG MKVTDHVISN 420
  421 EVIINLPSGL PPLRKKVQCI DMDSLSFQLG LYLSPHFLQA SNTIELGQQG FVQVSMSPLT 480
  481 SEVTVQLDSC HLDLGPEGDM VELIQSRAAK GSCVSLLSPS PEGDPRFSFL LRVYMVPTPA 540
  541 AGTLSCNLAL HPSTLSQEVY KTVSMRLNIV SPDLSGKGLV LPSVLGITFG AFLIGALLTA 600
  601 ALWYIYSHTR APSKREPVVA VAAPASSESS STNHSIGSTQ STPCSTSSMA 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle