YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2661577, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.97
Transmembrane Helix	55	77	0.89
Non-Cytoplasmic	78	101	0.90
Transmembrane Helix	102	124	0.87
Cytoplasmic	125	252	0.99
Transmembrane Helix	253	273	0.91
Non-Cytoplasmic	274	292	0.81
Transmembrane Helix	293	313	0.89
Cytoplasmic	314	319	0.85
Transmembrane Helix	320	342	0.87
Non-Cytoplasmic	343	347	0.73
Transmembrane Helix	348	369	0.87
Cytoplasmic	370	414	0.95
Transmembrane Helix	415	435	0.85
Non-Cytoplasmic	436	514	0.92
Transmembrane Helix	515	535	0.94
Cytoplasmic	536	551	0.88
Transmembrane Helix	552	570	0.88
Non-Cytoplasmic	571	581	0.73
Transmembrane Helix	582	607	0.81
Cytoplasmic	608	620	0.77
Transmembrane Helix	621	641	0.94
Non-Cytoplasmic	642	648	0.91
Transmembrane Helix	649	673	0.84
Cytoplasmic	674	687	0.79
Transmembrane Helix	688	706	0.91
Non-Cytoplasmic	707	711	0.76
Transmembrane Helix	712	729	0.93
Cytoplasmic	730	744	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLPNLHEL EEAERKREKR REYELLLEQR ARDTSRERER LSAFAQQRKQ SSYNAYIMAG  60
   61 LGIGGGSLSL NATAGTATGN GELLGGNGTT GGKGPNQAVG PASGLATSSG APVATSGFAM 120
  121 LGLGKKYAPH SHHHQHQHQH QHQHQHHQHR HSLTTRHRVL RTRSSGGAQN VWEEQMMEQH 180
  181 FTTYSPSPIS TRSHRINPVS SYQVQAALAA SRRRESINSS IGATSIRRLI TLNNRNCRHK 240
  241 VPAHVRQKVW RQFSCLSLAH GLMNCVLLPV MALQGSNAVW HHREEWLPLG PEVGSLLLSA 300
  301 LFLVAAGMSL PSIRLMKRYG YGPLIVANYM TVLLFLLSHL YASIYTLLPA YLLLGMTLSG 360
  361 SAGSKAAMIV HFGGKLSCSC DSQQSQAAVD VLHEEHKMFC NRDQKVRRLA RWFRVSQDLG 420
  421 LIGGALLASI LLACSDGNFT GDCSGLVYYG NESWPPQLRD FYNRNEHGDR ICGADMCPLR 480
  481 VQSILEAGWA NGSSIPSSIY AGFIESEPRV AGQSLLWLYV LFSMVSLTLS LLIVVDKVQA 540
  541 IGSSRPERSR DVSITDTLLF AGPLAYFVGT EQAYMMGDFL RAFVTCSLGI GMIAGALIGM 600
  601 GLMQLIVSCT LSMLLRHVKR IVVILAGFFF HSCLLLALSS WKPSSDDSAL FYVIAASWGA 660
  661 CNGMWETLLL SLVTLNHSSH VTEVQAPLLA LRFLGLGLTF AGHGFLCESM KIIALVVLLV 720
  721 ISVPPYATLE IRLEAQRKAT LVSL