YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1621117, gi|7...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAITTNRSSR TLWNWLLSSC LIFQLIGSSL ASQALSFTLE PQDAVVPEGH SVLLQCAGTA  60
   61 SIGRGGKSKS NLPSSVSIRW RGPDGQDLVI VGDTFRTQLK NGSLYISSVE ENRGLTGAYQ 120
  121 CLLTAEGVGS ILSRPALVAI VRQPDLNQDF LETYLLPGQT AYFRCMLGEA NWQEGVKHSV 180
  181 QWLKDDLPLP LDKLRMVVLP NGALEIDEVG PSDRGSYQCN VTSGSSSRLS SKTNLNIKKP 240
  241 SDPGVENSVA PSFLVGPSPK TVREGDTVTL DCVANGVPKP QIKWLRNGMD LDFNDLDSRF 300
  301 SIVGTGSLQI SSAEDIDSGN YQCRASNTVD SLDAQATVQV QEPPKFIKAP KDTTAHEKDE 360
  361 PELKCDIWGK PKPVIRWLKN GDLITPNDYM QLVDGHNLKI LGLLNSDAGM FQCVGTNAAG 420
  421 SVHAAARLRV VPQGVKIKKR KSQGHSTKSL QTFDNLTKRR KPFNSGEQLR TKSGGSFPFP 480
  481 DEDDDLDDND SGTTRLRIPS GKLPKFEQPL NDRRFNILNA GSALPLDNQS KSYEDDDDDY 540
  541 DEDDPAKEAL LEAYKQGEDA HKILDSWQQS KSKKSQQQKQ SPASPDSPEQ DPSVPHPGGK 600
  601 PLDSGLQARL PSQPRDLVAQ IVKSRFVTLS WVEPLQNAGD VVYYTVYYKM NNSEREQKMV 660
  661 TKSHDDQQVN IQSLLPGRTY QFRVEANTNF GSGASSAPLE VSTQPEVNIA GPPRNFEGYA 720
  721 RSHKEIYVKW EEPTVTNGEI LKYRVYYSEN DSGADLYHDS TALEAVLTEL RPHTDYVISV 780
  781 VPFNRNGMGD SSAEIRVKTF SSTPSEPPNN VTLEVTSSSS ITVHWEPPAE EDRNGQITGY 840
  841 KIRYRKFKDA PQVKSTPANI RYFELSNLDR NAEYQVKIAA MTVNGSGPFT EWNRANTLEN 900
  901 DLDETQVPGK PIWISIHPGA NNIALHWGPP QHPEIKIRNY VLGWGRGIPD ENTIELKETE 960
  961 RYHILKNLES NMDYVVSLRA RNVKGDGPPI YDNIKTRDEE PVDAPTPLEV PVGLRAITMS1020
 1021 SSSIVVYWID TMLNKNQHVT DNRHYTVSYG ITGSNRYRYH NTTDLNCMIN DLRPNTQYEF1080
 1081 AVKVVKGRRE SSWSMSVLNS TYQNVPVTPP REVTVRLDEM NPPTVIVQWI PPKHTLGQIT1140
 1141 GYNIYYTTDT TKRDRDWSVE AFAGEETMLM LPNLKPYTTY YFKVQARTTK GANNAPFSAL1200
 1201 VSYTTSAAVT MQEPDTIAKG IDNEKLLYII IAATAVVLLV VLLGVLLLCR RKPQSSPEHT1260
 1261 KKSYQKNNVG VPKPPDLWIH HDQMELKNID KGLHTVTPVC SDGASSSGAL TLPRSVVHSE1320
 1321 YEVETPVPGH VTNSLDKRSY VPGYMTTSMN GTMERPQYPR TQYSHQNRSH MTMEAGLSQQ1380
 1381 SLTQPQSNSM AQTPEHPYGG YDANFCNAGN AAAGNGCVST IESSKRGHPL KSFSVPGPPP1440
 1441 TGGATPVTKH TPAVTIRPQN QSPYKKPSFS AATPNRLQGG GSVVHSTDEI QRLAPSTSTE1500
 1501 ELNQEMANLE GLMKDLSAIT ANEFEC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle