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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1621115, gi|7...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAITTNRSSR TLWNWLLSSC LIFQLIGSSL ASQALSFTLE PQDAVVPEGH SVLLQCAGTA  60
   61 SIGRGGKSKS NLPSSVSIRW RGPDGQDLVI VGDTFRTQLK NGSLYISSVE ENRGLTGAYQ 120
  121 CLLTAEGVGS ILSRPALVAI VRQPDLNQDF LETYLLPGQT AYFRCMLGEA NWQEGVKHSV 180
  181 QWLKDDLPLP LDKLRMVVLP NGALEIDEVG PSDRGSYQCN VTSGSSSRLS SKTNLNIKKP 240
  241 SDPGVENSVA PSFLVGPSPK TVREGDTVTL DCVANGVPKP QIKWLRNGMD LDFNDLDSRF 300
  301 SIVGTGSLQI SSAEDIDSGN YQCRASNTVD SLDAQATVQV QEPPKFIKAP KDTTAHEKDE 360
  361 PELKCDIWGK PKPVIRWLKN GDLITPNDYM QLVDGHNLKI LGLLNSDAGM FQCVGTNAAG 420
  421 SVHAAARLRV VPQGDSPEQD PSVPHPGGKP LDSGLQARLP SQPRDLVAQI VKSRFVTLSW 480
  481 VEPLQNAGDV VYYTVYYKMN NSEREQKMVT KSHDDQQVNI QSLLPGRTYQ FRVEANTNFG 540
  541 SGASSAPLEV STQPEVNIAG PPRNFEGYAR SHKEIYVKWE EPTVTNGEIL KYRVYYSEND 600
  601 SGADLYHDST ALEAVLTELR PHTDYVISVV PFNRNGMGDS SAEIRVKTFS STPSEPPNNV 660
  661 TLEVTSSSSI TVHWEPPAEE DRNGQITGYK IRYRKFKDAP QVKSTPANIR YFELSNLDRN 720
  721 AEYQVKIAAM TVNGSGPFTE WNRANTLEND LDETQVPGKP IWISIHPGAN NIALHWGPPQ 780
  781 HPEIKIRNYV LGWGRGIPDE NTIELKETER YHILKNLESN MDYVVSLRAR NVKGDGPPIY 840
  841 DNIKTRDEEP VDAPTPLEVP VGLRAITMSS SSIVVYWIDT MLNKNQHVTD NRHYTVSYGI 900
  901 TGSNRYRYHN TTDLNCMIND LRPNTQYEFA VKVVKGRRES SWSMSVLNST YQNVPVTPPR 960
  961 EVTVRLDEMN PPTVIVQWIP PKHTLGQITG YNIYYTTDTT KRDRDWSVEA FAGEETMLML1020
 1021 PNLKPYTTYY FKVQARTTKG ANNAPFSALV SYTTSAAVTM QEPDTIAKGI DNEKLLYIII1080
 1081 AATAVVLLVV LLGVLLLCRR KPQSSPEHTK KSYQKNNVGV PKPPDLWIHH DQMELKNIDK1140
 1141 GLHTVTPVCS DGASSSGALT LPRSVVHSEY EVETPVPGHV TNSLDKRSYV PGYMTTSMNG1200
 1201 TMERPQYPRT QYSHQNRSHM TMEAGLSQQS LTQPQSNSMA QTPEHPYGGY DANFCNAGNA1260
 1261 AAGNGCVSTI ESSKRGHPLK SFSVPGPPPT GGATPVTKHT PAVTIRPQNQ SPYKKPSFSA1320
 1321 ATPNRLQGGG SVVHSTDEIQ RLAPSTSTEE LNQEMANLEG LMKDLSAITA NEFEC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle