YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1763537
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFLSLEPLS LLLLKDSFIN KSNPEYESMQ HQQILLKKLK LHFPRRKENS WKRSLRSGLI  60
   61 ELLNQSFEVR MLTHENNNKK NSYVFRLFDR VSSSTFYFFN SLFAYFIILL RIINEVILLA 120
  121 INYRPIPLSY NMMDIFVSAR QVDLRLQQAC FWPVQYMKLW VFRKSKRVAI EDYKEYIRFY 180
  181 NNLWLVANDM IFGITMSSFI LENLHLVVKL IENITFEYAI KNVRSMVIWL VDTPAGLKLN 240
  241 NDICKFIMKL SVWVIDVWSN FLLHCLPWTP FLVQVVAISG FGGASLMIAL ISDFLSVMTI 300
  301 HIHLLYLASS RMYNWQLRVI YSLLQLFRGK KRNVLRNRID SYEYDLDQLL LGTILFTVLI 360
  361 FFLPTIYVFY AAFALTRVSV MTCLAICETM LAFLNHFPLF VTMLRIKDPY RIPSGLNFEI 420
  421 VSFEPLKQDG FATLYLNCNS KPMSLGSMFE HYRKLARRLI SHYLSKTTLI SLLVGCPVPA 480
  481 IPAEQLYNIQ YAMLPTKRIS IRKLRDLLFH QKKFPYD

Type	Start	End	Confidence
Cytoplasmic	1	95	0.70
Transmembrane Helix	96	121	0.72
Non-Cytoplasmic	122	184	0.57
Transmembrane Helix	185	206	0.55
Cytoplasmic	207	256	0.76
Transmembrane Helix	257	278	0.66
Non-Cytoplasmic	279	282	0.47
Transmembrane Helix	283	307	0.77
Cytoplasmic	308	348	0.83
Transmembrane Helix	349	371	0.89
Non-Cytoplasmic	372	377	0.64
Transmembrane Helix	378	399	0.86
Cytoplasmic	400	462	0.92
Transmembrane Helix	463	483	0.68
Non-Cytoplasmic	484	517	0.74