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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|13160942
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKDMTSDGA VTFWIFLLCL IASPHLQGGV AGRPDELHIG GIFPIAGKGG WQGGQACMPA  60
   61 TRLALDDVNK QPNLLPGFKL ILHSNDSECE PGLGASVMYN LLYNKPQKLM LLAGCSTVCT 120
  121 TVAEAAKMWN LIVLCYGASS PALSDRKRFP TLFRTHPSAT VHNPTRIKLM KKFGWSRVAI 180
  181 LQQAEEVFIS TVEDLENRCM EAGVEIVTRQ SFLSDPTDAV RNLRRQDARI IVGLFYVVAA 240
  241 RRVLCEMYKQ QLYGRAHVWF FIGWYEDNWY EVNLKAEGIT CTVEQMRIAA EGHLTTEALM 300
  301 WNQNNQTTIS GMTAEEFRHR LNQALIEEGY DINHDRYPEG YQEAPLAYDA VWSVALAFNK 360
  361 TMERLTTGKK SLRDFTYTDK EIADEIYAAM NSTQFLGVSG VVAFSSQGDR IALTQIEQMI 420
  421 DGKYEKLGYY DTQLDNLSWL NTEQWIGGKV PQDRTIVTHV LRTVSLPLFV CMCTISSCGI 480
  481 FVAFALIIFN IWNKHRRVIQ SSHPVCNTIM LFGVIICLIS VILLGIDGRF VSPEEYPKIC 540
  541 QARAWLLSTG FTLAYGAMFS KVWRVHRFTT KAKTDPKKKV EPWKLYTMVS GLLSIDLVIL 600
  601 LSWQIFDPLQ RYLETFPLED PVSTTDDIKI RPELEHCESQ RNSMWLGLVY GFKGLILVFG 660
  661 LFLAYETRSI KVKQINDSRY VGMSIYNVVV LCLITAPVGM VIASQQDASF AFVALAVIFC 720
  721 CFLSMLLIFV PKVIEVIRHP KDKAESKYNP DSAISKEDEE RYQKLVTENE QLQRLITQKE 780
  781 EKIRVLRQRL VERGDAKGTE LNGATGVASA AVATTSQPAS LINSSAHATP AATLAITQGE 840
  841 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle