YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39581166, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLFSAITI SLIASTALAY DAVLFSNQRE IRGESIEKLA KAATPEEPVV FIVNPDFTLG  60
   61 QFSVKANAYS SEPTTDFLAK SVKNSNFHGS QYFPHPIEAS TAQVVTSSEE YKAGSAVYII 120
  121 AGEEWTSMEQ LAEQLISRID NSVGVVTSTD AVLHERTNRV KRVATDEMDG ASESSEGPEA 180
  181 TGSYPFPLVL PPYNNSAIKT TPEANLTCLF YLEGLSVVVQ QKTDKAFSYA AAYLPGANLT 240
  241 YSYADGDASC LKGPVGNFSF RVRAQLHQDV TGKQFNTPAF TMKSGDSVDF TLKITGDVFG 300
  301 YWSLTGAVMH NVAVTGQGNY KSAKVMEQTI GEPETQYSKI NSVAGWSLVC GQTQAVFFPS 360
  361 DTDTVKIGIS LVNTQIQLFN VNSKPEKWLA AQQFTLQAED CTGTFSAGSW MGIISALVLI 420
  421 GGLIFGYVML QSVQTMDRFD DPKQKQIVIN VRE

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	406	0.99
Transmembrane Helix	407	429	0.90
Cytoplasmic	430	453	0.93