YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39580740, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	21	0.94
Transmembrane Helix	22	43	0.87
Non-Cytoplasmic	44	50	0.72
Transmembrane Helix	51	70	0.89
Cytoplasmic	71	86	0.84
Transmembrane Helix	87	106	0.92
Non-Cytoplasmic	107	114	0.75
Transmembrane Helix	115	136	0.90
Cytoplasmic	137	145	0.81
Transmembrane Helix	146	164	0.91
Non-Cytoplasmic	165	186	0.91
Transmembrane Helix	187	209	0.87
Cytoplasmic	210	229	0.89
Transmembrane Helix	230	252	0.92
Non-Cytoplasmic	253	261	0.80
Transmembrane Helix	262	283	0.91
Cytoplasmic	284	296	0.91
Transmembrane Helix	297	318	0.91
Non-Cytoplasmic	319	325	0.85
Transmembrane Helix	326	347	0.93
Cytoplasmic	348	403	0.71
Transmembrane Helix	404	425	0.92
Non-Cytoplasmic	426	434	0.58
Transmembrane Helix	435	456	0.84
Cytoplasmic	457	470	0.49
Transmembrane Helix	471	493	0.87
Non-Cytoplasmic	494	506	0.53
Transmembrane Helix	507	526	0.87
Cytoplasmic	527	556	0.49
Transmembrane Helix	557	579	0.87
Non-Cytoplasmic	580	584	0.34
Transmembrane Helix	585	608	0.83
Cytoplasmic	609	743	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAQDFVKKD DRNFTPTQSS RSASYFVVLV LTKILRCIGI FFVDILAKSS HIVNLLWLCK  60
   61 IICTCILFPL QKPLSSGKSL KRGLLPMILK LSLLNGVIEI LWFYGITLCG PLRSVLVFEL 120
  121 SSTVLLSAIV SFFKGGSVST TSKTRGFFLL IVGFVCLFLM DRDGTIEDPH HTTHAHHSGL 180
  181 NHLFYHLIGL FGMADHKGGL CILLIALLLR TAYETTFRHL AVEVGGAKKL HTLVTAGSAV 240
  241 CLTPVAVLSW ALSTSSLASM GFFEYAILLV VVAVFVFVLD FYAESICFQH VADPVMAAAR 300
  301 WSSVTMFSCA FGLAYLWYGH QNLGDHALTG GVSITVVCFI LASISLTHSN QPKHRGGQFV 360
  361 GISNTGLPLF TYGEAFLQKT SKSLMRFMKD TLHEILSNSD SRKIFWFLCV NLGFCGIEFL 420
  421 YGFWTNSLGL ISDGFHMLFD CSALVMGLVA SVMARWPPSK NFTFGFGRVE ILSGFINALF 480
  481 LCVIALFILI EALERLFDPP NINTDKLLFV AISGLLVNLF GMYSLGEHGH SHGGSSHGHS 540
  541 HGGGSHGHSH GNANMQGVFL HVLADTLGSV FVIISTLLIQ WFGWVWVDPL CSLILSLLII 600
  601 GSVYPLLVSS VNTLLQDVPE EDEFEYHVNE ILEIENVDSY SNAHLWQHND MNVASVHVQV 660
  661 KDEANAQMVR HRVANILKNL GASHSTVQVE KKAFAHRVQQ LCPGYKSGYT IVRGSVIRDS 720
  721 SKKQHGHSHD HHGHSHDHGG HHH