YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157773563
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEDDLESAT PAESQKLLQK GNRNSFDETD MVMVLDDDQL IMENRNSSDL QSPLRSVTDV  60
   61 LREAENIITD GPLQQATTLE NQNVIVDQVD VEFPNTQPAD GQRFEIIVRH SKVVEQPANQ 120
  121 QRDESMYATR QNRLATVLEG IEIEGGDGPS TSASTSGVST FKKGHRRAWS MPNAKGEKMT 180
  181 VAVIHDNHEE GGNQYRRRIV KYKLHPQRRT DEPGVPQKQL RFVTAGHDAE IHLEHSDDDD 240
  241 ELEVEINEEE VIIPSETGEG PRAVIKRFWE ARWKATNFET LPEWLQDNEY LRTGHRPPLP 300
  301 SFSSCFKSIF ALHTETGNIW THMYGCVAFF GIGLWFLTRP HDQMQWIEKL IYSAFFLGAV 360
  361 ICLGMSFLFH TVACHSIEMS KLFSKLDYTG ISLLIVGSFV PWIYFAFYCR PQPMIIYNAM 420
  421 IIILGIAAMV VSLWDKFAEP KFRPVRAAVF IAMGLSAVVP AFHLLIVDGV DYMIEESQVH 480
  481 LMLIMGAMYI GGATLYATRV PERCFPGKCD IWFQSHQLFH TFVVLAAFVH YHAISQMGMH 540
  541 KLMKGSCSEQ LKTRYGSELN PSFLGTLLGL DEAVGVRDWT PADIGL

Type	Start	End	Confidence
Cytoplasmic	1	318	0.86
Transmembrane Helix	319	338	0.94
Non-Cytoplasmic	339	349	0.82
Transmembrane Helix	350	374	0.87
Cytoplasmic	375	385	0.80
Transmembrane Helix	386	406	0.92
Non-Cytoplasmic	407	413	0.73
Transmembrane Helix	414	434	0.95
Cytoplasmic	435	444	0.75
Transmembrane Helix	445	467	0.90
Non-Cytoplasmic	468	478	0.79
Transmembrane Helix	479	498	0.93
Cytoplasmic	499	515	0.75
Transmembrane Helix	516	534	0.86
Non-Cytoplasmic	535	586	0.77