YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157773665
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.92
Transmembrane Helix	50	69	0.87
Non-Cytoplasmic	70	102	0.80
Transmembrane Helix	103	121	0.77
Cytoplasmic	122	127	0.82
Transmembrane Helix	128	149	0.90
Non-Cytoplasmic	150	159	0.69
Transmembrane Helix	160	179	0.87
Cytoplasmic	180	190	0.83
Transmembrane Helix	191	213	0.91
Non-Cytoplasmic	214	220	0.78
Transmembrane Helix	221	241	0.94
Cytoplasmic	242	284	0.95
Transmembrane Helix	285	305	0.91
Non-Cytoplasmic	306	323	0.89
Transmembrane Helix	324	344	0.90
Cytoplasmic	345	361	0.87
Transmembrane Helix	362	381	0.91
Non-Cytoplasmic	382	385	0.78
Transmembrane Helix	386	407	0.92
Cytoplasmic	408	416	0.80
Transmembrane Helix	417	438	0.91
Non-Cytoplasmic	439	450	0.80
Transmembrane Helix	451	471	0.95
Cytoplasmic	472	576	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRTLKKSA SAISDTLRRT FSTKTWEHRE QLHTLQEDNK FFLKKVRWQI AFLAHIGFAI  60
   61 SFGIRSNFGV AKNRMVNNFT DAYGEVHEKE FFWTGTEVGM MESSFFYGYA ASQIPAGVLA 120
  121 AKFSPNKLFM LGILVAAILN VLTAVSLKFH PFTDIFVMCI QTSQGLALGV CYPAMHGVWK 180
  181 FWAPPLERSK LATTTFTGAS IGVMVGLPAS AYLVSHFHWS APFHVFGVLG IIWAFAWMYV 240
  241 AGDSPATHRY IAEDEKKFIT DKVGTVAVKN MTLTTLPWRD MMTSTAVWAI IICSFCRSWS 300
  301 FFLLLGNQLT YMKDVLHIDI KNSGLIAIFP QLGMCIVTLS SGQLSDYLRS SGKMSTEAVR 360
  361 KSVNTFGFGV EAIMLGCLAF IRDPVIAVTC LIIACSGAGA VLSGFNVNHF DIAPRYAPIL 420
  421 MGISNGLGAI AGVGGIATNS MTFENPDGWK WVFLLAMSID ICGIIFFLVF AKGDVLPWAR 480
  481 EPEKEETFNE FVRRMSTMVR SLSKRTRSRS TDTNYAKMEE ERVNSSEMKA CSKTTENEVS 540
  541 PSEDNVLNET QAVGGNLEVV PEEPSQKNLK TDRPEV