YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60468533, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNRAGLRCL KPSIFKQTKS NLIINNSNIL SVSSRLSKNN NINQSFNNGF LQSNSKLNSI  60
   61 ISLNNNNNNY YKRFYSNENK TNSNEQVKEE EKTNDNSSNN NEEDYKEPEQ SKGNKKVGNW 120
  121 LLFSCGLVGA MIVIGGITRL TESGLSIVDW KPVVGAIPPI TQEEWEAEFE KYKQFPEYKR 180
  181 LNMGMTLSEF KEIFFWEYSH RLLGRVIGVA FFFPFVWYLK KGYINRSLAK KLSVVFLMGG 240
  241 AQGALGWYMV KSGLDEKLIQ DRGSDIPRVS QYRLAAHLGS AFVIYMALLW FGLGLVRPSA 300
  301 LSPAMMQKLK SAMSTLAQQK SSFTIEKMKK YSHQVSGLIF LTAMSGAFVA GLDAGLVYNT 360
  361 FPKMGHQWIP DDIINPKIKP AYKNMFEHDV TVQFQHRVLA TITYGSILAL SAFAYRGRLA 420
  421 LSPKARLATN CLLAVGTAQV ALGITTLLTF VPVSLGAAHQ TGSLTLLSVA IWLLHELKKL 480
  481 PK

Type	Start	End	Confidence
Cytoplasmic	1	119	0.98
Transmembrane Helix	120	140	0.93
Non-Cytoplasmic	141	201	0.97
Transmembrane Helix	202	219	0.97
Cytoplasmic	220	231	0.75
Transmembrane Helix	232	250	0.92
Non-Cytoplasmic	251	273	0.97
Transmembrane Helix	274	296	0.86
Cytoplasmic	297	334	0.93
Transmembrane Helix	335	357	0.90
Non-Cytoplasmic	358	395	0.95
Transmembrane Helix	396	417	0.89
Cytoplasmic	418	426	0.89
Transmembrane Helix	427	449	0.91
Non-Cytoplasmic	450	455	0.79
Transmembrane Helix	456	475	0.93
Cytoplasmic	476	482	0.91