YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12744728
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYQCTNDAG YDTEHTSLNS DFDEAELRRE LLRDKWKLLF DMFDPEGFGE ISVEEFLVAL  60
   61 KSPEFLSQVP MNKRELLLER AKKAKLPAGP GYVTFQDFVN VMSGKRTRSF KCAVHHRDRE 120
  121 VCSENDFQLV LNEPPLFRKM VHAVAMEILP EERDRKYYAD RYTCCPPPFF IILVTLVELG 180
  181 FFVYHSVVTG EAAPRGPIPS DSMFIYRPDK RHEIWRFLFY MVLHAGWLHL GFNVAVQLVF 240
  241 GLPLEMVHGS TRIACIYFSG VLAGSLGTSI FDPDVFLVGA SGGVYALLAA HLANVLLNYH 300
  301 QMRYGVIKLL HILVFVSFDF GFAIYARYAG DELQLGSSSE FPAIDQAETA GAVSYVAHLA 360
  361 GAIAGLTIGL LVLKSFEQRL HEQLLWWIAL GTYLALVVFA IAFNIMNGFA MFNIRVEKIR 420
  421 VTETIFNDFQ V

Type	Start	End	Confidence
Cytoplasmic	1	162	0.95
Transmembrane Helix	163	184	0.80
Non-Cytoplasmic	185	222	0.85
Transmembrane Helix	223	242	0.90
Cytoplasmic	243	252	0.69
Transmembrane Helix	253	271	0.89
Non-Cytoplasmic	272	275	0.86
Transmembrane Helix	276	297	0.91
Cytoplasmic	298	306	0.80
Transmembrane Helix	307	329	0.89
Non-Cytoplasmic	330	350	0.97
Transmembrane Helix	351	373	0.89
Cytoplasmic	374	383	0.87
Transmembrane Helix	384	405	0.93
Non-Cytoplasmic	406	431	0.96