YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12658422
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	74	0.97
Transmembrane Helix	75	94	0.78
Non-Cytoplasmic	95	112	0.80
Transmembrane Helix	113	137	0.84
Cytoplasmic	138	143	0.78
Transmembrane Helix	144	163	0.90
Non-Cytoplasmic	164	168	0.69
Transmembrane Helix	169	191	0.78
Cytoplasmic	192	201	0.83
Transmembrane Helix	202	225	0.81
Non-Cytoplasmic	226	232	0.61
Transmembrane Helix	233	251	0.93
Cytoplasmic	252	292	0.94
Transmembrane Helix	293	312	0.91
Non-Cytoplasmic	313	328	0.83
Transmembrane Helix	329	352	0.88
Cytoplasmic	353	365	0.82
Transmembrane Helix	366	383	0.94
Non-Cytoplasmic	384	389	0.71
Transmembrane Helix	390	412	0.86
Cytoplasmic	413	421	0.85
Transmembrane Helix	422	446	0.90
Non-Cytoplasmic	447	453	0.76
Transmembrane Helix	454	476	0.91
Cytoplasmic	477	493	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVALSSVTQG HPRAGAVVDE SNRRTRQRRA WPPPGWRMQK RDPPTRAGCR PSGAATQATR  60
   61 MSEVPTAASA RLGRVRWRVC ALLLAATTIN YVDRQVLGVL APFLQTQIGW NEIQYGYIVT 120
  121 AFQAAYALGL LCSGAVIDRF GTRLGYALAI GVWSLAAMGH ALATSVVGFA IARFFLGLGE 180
  181 SGNFPAALKT VAEWFPRRER ALATGIFNSG SNIGAIVAPL LVPLIATAWG WQSAFLFTGV 240
  241 LSATWLPVWW FRYHSPEQQP GLSAAELAHI RSDAHEPVQR RLSWLQVLRH RQAWAFVLGK 300
  301 LITDPIWWFF LFWLPKFLHA QYGLSLLQLG APLIVIFVLA DIGSIAGGWV AGRFIARGWS 360
  361 VNRARKTAML ICAISVVPIV FAARADNLWL AVALIGLATA AHQGWSANLF TLPSDMFPRH 420
  421 AVATVVGIGG FAGAVGGMLI ATFIGFLLQA TGSYVPVFII AGSAYLLALA VVHTLVPRLE 480
  481 PAQWHADPAP ASS