YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UTR5B_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPELVNGG VKENKLWKGV FAVSGIMSTL VIYGVLQEKI MRVPYGVNKE FFKHSLFLVF  60
   61 CNRLTTSAVS AGALLASKKV LDPVAPVYKY CLISVTNILT TTCQYEALKY VSFPVQTLAK 120
  121 CAKMIPVMVW GTLIMQKKYK GFDYLVAFLV TLGCSVFILF PAGDDVSPYN KGRENTVWGV 180
  181 SLMAGYLGFD GFTSTFQDKL FKGYNMEIHN QIFYTTLCSC VLSFTGLILQ GHLLPAVDFV 240
  241 SLHRDCLLDI ALLSTVATAS QFFISYTIRT FGALTFAAIM TTRQLASIML SCIWFSHPLS 300
  301 WEQCIGSVIV FGSLYAKNLL NNKKNSQTQP PPPELPQYEK VESS

Type	Start	End	Confidence
Cytoplasmic	1	15	0.57
Transmembrane Helix	16	36	0.83
Non-Cytoplasmic	37	55	0.42
Transmembrane Helix	56	75	0.49
Cytoplasmic	76	141	0.78
Transmembrane Helix	142	162	0.93
Non-Cytoplasmic	163	175	0.88
Transmembrane Helix	176	196	0.80
Cytoplasmic	197	211	0.77
Transmembrane Helix	212	234	0.91
Non-Cytoplasmic	235	246	0.78
Transmembrane Helix	247	268	0.64
Cytoplasmic	269	270	0.37
Transmembrane Helix	271	297	0.60
Non-Cytoplasmic	298	298	0.29
Transmembrane Helix	299	316	0.37
Cytoplasmic	317	344	0.56