YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12231914
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNMSLYLLL GSSALAFAAY LVLFSFSKSR RRLPPGPKAW PIVGNLPHMG SMPHQNLAAM  60
   61 ARTYGPLVYL RLGFVDVVVA LSASMASQFL KTHDSNFSSR PPNAGAKHIA YNYHDLVFAP 120
  121 YGPRWRLFRK ITSIHLFSGK ALDDYRHVRQ EEVGVLASNL ARAVSTIVNL GQLLNICATN 180
  181 ALGRAVIGKK VFKDGTDDVD PKADEFKSMV VELMVLAGVF NIGDFIPPLD CLDLQGVASK 240
  241 MKNLHKRFDA FLSAILQEHN INSAASATPS MLTTLISLKD SVEDSEGGKL TDTEIKALLL 300
  301 NMFTAGTDTT SSTVEWAIAE LIRQPEILIR AQKEIDSVVG RDRLVTELDL SKLPYLQAIV 360
  361 KETFRLHSST PLSLPRIATQ SCEINGYHIP KGATLLVNVW AIARDPDVWA DPLSFRPERF 420
  421 LPGSEKENVD VKGNDFELIP FGAGRRICAG MSLGLRMVQL LTATLLHAFN WDLPQGQIPQ 480
  481 ELNMDEAYGL TLQRASPLHV RPRPRLPSHL Y

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.62
Transmembrane Helix	6	26	0.68
Cytoplasmic	27	66	0.65
Transmembrane Helix	67	87	0.60
Non-Cytoplasmic	88	511	0.93