YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1778491
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.97
Transmembrane Helix	40	61	0.89
Non-Cytoplasmic	62	66	0.67
Transmembrane Helix	67	86	0.90
Cytoplasmic	87	105	0.91
Transmembrane Helix	106	129	0.73
Non-Cytoplasmic	130	146	0.71
Transmembrane Helix	147	166	0.95
Cytoplasmic	167	175	0.80
Transmembrane Helix	176	196	0.95
Non-Cytoplasmic	197	219	0.87
Transmembrane Helix	220	242	0.90
Cytoplasmic	243	260	0.94
Transmembrane Helix	261	283	0.91
Non-Cytoplasmic	284	302	0.94
Transmembrane Helix	303	324	0.92
Cytoplasmic	325	351	0.95
Transmembrane Helix	352	373	0.93
Non-Cytoplasmic	374	379	0.79
Transmembrane Helix	380	402	0.91
Cytoplasmic	403	419	0.92
Transmembrane Helix	420	441	0.93
Non-Cytoplasmic	442	447	0.81
Transmembrane Helix	448	467	0.93
Cytoplasmic	468	470	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLNKKDTQG KGVKNASTVS EDTASNQEPT LHRGLHNRHI QLIALGGAIG TGLFLGIGPA  60
   61 IQMAGPAVLL GYGVAGIIAF LIMRQLGEMV VEEPVSGSFA HFAYKYWGPF AGFLSGWNYW 120
  121 VMFVLVGMAE LTAAGIYMQY WFPDVPTWIW AAAFFIIINA VNLVNVRLYG ETEFWFALIK 180
  181 VLAIIGMIGF GLWLLFSGHG GEKASIDNLW RYGGFFATGW NGLILSLAVI MFSFGGLELI 240
  241 GITAAEARDP EKSIPKAVNQ VVYRILLFYI GSLVVLLALY PWVEVKSNSS PFVMIFHNLD 300
  301 SNVVASALNF VILVASLSVY NSGVYSNSRM LFGLSVQGNA PKFLTRVSRR GVPINSLMLS 360
  361 GAITSLVVLI NYLLPQKAFG LLMALVVATL LLNWIMICLA HLRFRAAMRR QGRETQFKAL 420
  421 LYPFGNYLCI AFLGMILLLM CTMDDMRLSA ILLPVWIVFL FMAFKTLRRK