YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCC_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	92	0.99
Transmembrane Helix	93	113	0.92
Non-Cytoplasmic	114	140	0.89
Transmembrane Helix	141	166	0.85
Cytoplasmic	167	186	0.92
Transmembrane Helix	187	209	0.86
Non-Cytoplasmic	210	252	0.55
Transmembrane Helix	253	277	0.86
Cytoplasmic	278	287	0.47
Transmembrane Helix	288	311	0.82
Non-Cytoplasmic	312	333	0.51
Transmembrane Helix	334	359	0.85
Cytoplasmic	360	455	0.52
Transmembrane Helix	456	475	0.87
Non-Cytoplasmic	476	479	0.50
Transmembrane Helix	480	501	0.81
Cytoplasmic	502	514	0.57
Transmembrane Helix	515	539	0.81
Non-Cytoplasmic	540	757	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSLNKPLS DRVEDINNQS SMIYDPWRHR GDVNSTYHSS SSVTHRRRNH RLSPLEKQKM  60
   61 KNIQSLNFSV NDNLLQREEY EKTTKGLHLK KTFGKWIICL FLGVIVGCIA YVIKMVVQLL 120
  121 QGLKFHYTNH YVSNGLQGEA FLTFLGINLL FVFLSCLMVI VAGPLASSSG IPEVKGILNG 180
  181 VKVREALGFR ALLGKIVSLV LSFSSGLFVG PEGPMIHIGS AVGAAISQFK SSTMGFYPSL 240
  241 FLSYRNDRDK RDFISIGAAT GLAAAFGAPI GGVLFSIEEV SSFWSRQLTW RTFFTCVIAA 300
  301 FTTNFLLQGI GSSPDMHDTG LLTFGFSRLY LFRYSELLCF CFLGLIGGLL GAFFVFLNIH 360
  361 LNKWRKEKLK QNPYLRLFEA LFVSVVTSVV CYYASFIFDC RYQSNIVIET SVCEDQSNTE 420
  421 MVQFFCPDGM YSELGSLLFG NPDQALRRLY SRTNNMFTLP PLLVFTLISL FFSIWSSGLW 480
  481 VAGGLFVPMM MVGAGFGRLF GQTISMWFTN IDSSIYALVG SAAMMAGYCR MTVCIVVIMV 540
  541 ELTEGTQYLV PIILAVMISK WVGDFFNESV YEHLMEQKSI PFLQSKPPHS TNNIRISDVM 600
  601 SKNVVVLPEV CQVRLLVNIL NSNNHNAFPV INSGPYDNQR LYRGIILRDH ILVLLFYRVF 660
  661 YRGTGEEIYL DENFDFDKFT TETSKSPPPL SEMNFDQFEL DSFIDLRPYM NSSGVTIHNT 720
  721 FSFVEAYKLF RNMGLRHLPV IDINNEVVGM VTRNDLF