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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|11907988
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVDRSRRAV FPLLLLLAGL NGLTQVGALK GENPRIIEHP MDTTVPKNDP FTFNCQAEGN  60
   61 PTPTIQWFKD GRELKTDTGS HRIMLPAGGL FFLKVIHSRR ESDAGTYWCE AKNEFGVARS 120
  121 RNATLQVAFL RDEFRLEPAN TRVAQGEVAL MECGAPRGSP EPQISWRKNG QTLNLVGNKR 180
  181 IRIVDGGNLA IQEARQSDDG RYQCVVKNVV GTRESATAFL KVHVRPFLIR GPQNQTAVVG 240
  241 SSVVFQCRIG GDPLPDVLWR RTASGGNMPL RRVHVLEDRS LKLDDVTLED MGEYTCEADN 300
  301 AVGGITATGI LTVHAPPKFV IRPKNQLVEI GDEVLFECQA NGHPRPTLYW SVEGNSSLLL 360
  361 PGYRDGRMEV TLTPEGRSVL SIARFAREDS GKVVTCNALN AVGSVSSRTV VSVDTQFELP 420
  421 PPIIEQGPVN QTLPVKSIVV LPCRTLGTPV PQVSWYLDGI PIDVQEHERR NLSDAGALTI 480
  481 SDLQRHEDEG LYTCVASNRN GKSSWSGYLR LDTPTNPNIK FFRAPELSTY PGPPGKPQMV 540
  541 EKGENSVTLS WTRSNKVGGS SLVGYVIEMF GKNETDGWVA VGTRVQNTTF TQTGLLPGVN 600
  601 YFFLIRAENS HGLSLPSPMS EPITVGTRYF NSGLDLSEAR ASLLSGDVVE LSNASVVDST 660
  661 SMKLTWQIIN GKYVEGFYVY ARQLPNPIVN NPAPVTSNTN PLLGSTSTSA SASASASALI 720
  721 STKPNIAAAG KRDGETNQSG GGAPTPLNTK YRMLTILNGG GASSCTITGL VQYTLYEFFI 780
  781 VPFYKSVEGK PSNSRIARTL EDVPSEAPYG MEALLLNSSA VFLKWKAPEL KDRHGVLLNY 840
  841 HVIVRGIDTA HNFSRILTNV TIDAASPTLV LANLTEGVMY TVGVAAGNNA GVGPYCVPAT 900
  901 LRLDPITKRL DPFINQRYPI NQDHVNDVLT QPWFIILLGA ILAVLMLSFG AMVFVKRKHM 960
  961 MMKQSALNTM RGNHTSDVLK MPSLSARNGN GYWLDSSTGG MVWRPSPGGD SLEMQKDHIA1020
 1021 DYAPVCGAPG SPAGGGTSSG GSGGAGSGAS GGDDIHGGHG SERNQQRYVG EYSNIPTDYA1080
 1081 EVSSFGKAPS EYGRHGNASP APYATSSILS PHQQQQQQQP RYQQRPVPGY GLQRPMHPHY1140
 1141 QQQQHQQQQA QQTHQQHQAL QQHQQLPPSN IYQQMSTTSE IYPTNTGPSR SVYSEQYYYP1200
 1201 KDKQRHIHIT ENKLSNCHTY EAAPGAKQSS PISSQFASVR RQQLPPNCSI GRESARFKVL1260
 1261 NTDQGKNQQN LLDLDGSSMC YNGLADSGCG GSPSPMAMLM SHEDEHALYH TADGDLDDME1320
 1321 RLYVKVDEQQ PPQQQQQLIP LVPQHPAEGH LQSWRNQSTR SSRKNGQECI KEPSELIYAP1380
 1381 GSVASERSLL SNSGSGTSSQ PAGHNV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle