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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|11545212
Protein type: Globular with Signal Peptide
Type Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKCMIFIKL LFYIALLHKW NGVESQPTSS GRSNSSGSQG SRAQSTTPKS QNQTQSSQSQ  60
   61 SESTASATSR RRTGTTGAQG SQPTKPPSQP ASSNGSGSHA SPRASTGQSS TPKSQPTTPT 120
  121 SQSQPKSTAS RTSSTGVGQA RGTPSSATSQ PSRGVGVGRG SQPKATAATI GTSTPTTPPT 180
  181 PTTSAAQTKA TPTTGARPAT QPKVTPASAS STQPKSQANV TPVSGSAAPS VSTSATPTKP 240
  241 VSQSTPTTSV TKVTLNIDTT KESTSELDYS KIGDIHNYTP KQNHLFSKVT HGSVVVWESK 300
  301 TEVHGTRVTY VCIIKYLVVL LSNDMFLLFH QSSGTWTDVT KERYDVDKLK FFGENDAALN 360
  361 KSSYSTTLIS YSYSLEFNAG VKCQKVKYGN EDVWKHSDDT DFGSIKSLFI DLISNQLSVK 420
  421 NESGQLKKLE YKPKESNGTT SETADATKEP TTPTTVTTKS DPTTTATATE TSSSTLTTES 480
  481 DTATTQTTPV TTPTSSGSSV TQSKRLESSS TSGNIHTFTS GVSHSAVDAS QGASVLDSGS 540
  541 SSSTLVLTEY KRLPSIRLTT STDTDTSSKS QTATPVTTTT TNVALDIDKK QSTDQFEYSD 600
  601 INNYRIYVAK TNFVFNKIVQ GTTVIWESKD YCATSVTTKT IDNKVFLAIV LSNGMFTLVE 660
  661 KSSGKWTDIT LIGTWYLHLK FYGDRDTEIK SSKYSVTMSG LSYNLDFNTN VDCKKIKYNN 720
  721 VTLWSHTDDS EFGTIKSLSL DLAKNVFFVK NSADIVKKLE LKYISLDIDK KQSTDESDYS 780
  781 KSDCHTYMTK SNFVFNRIVQ GTDFVWKSQV LFGTKVTAAG DFLTILLNNG TFKLFQKSVG 840
  841 EWIDITPNKH DIGKLKFYGE GDRLLKSYDY SVTLSCLAFS YEFNVGSECH KVKYGDDVLW 900
  901 NHSDDSQFGT IKTFSLDLPK NQFTIKNNSG TVKNVEFKYV ILDLNTMEST DHFDRTGDDG 960
  961 IFKFVVKSGY VFSKVVQGTS VVWEPRDSAY CTEVTYIVAG DFKYLSAVLD NGSCLLLYKT1020
 1021 SKDKPFKDIT STSYNVTRLK FLTDDNSELS TSDYKVTVAE HCYNLEFNSD VKCSKITHNG1080
 1081 ADLWKHSDDT QFGTIKSLHL NLINNQLGLK NQSNTLKELQ APLPPTPDVT DTTGTKITID1140
 1141 LNETKEVEGM FTYSHDGKCH TYATAGFGNT FGKVMKGTRV VWEPVGNVQA KKIIYVDDHV1200
 1201 KNVVVVLTDG KFLLLKQSDN NWDDVTKYTL DVSKLVFLGD NHGATSLGVS ASVTVVDTAM1260
 1261 TLTPDDQSKL ISGSASSSPV TSPVSQPKSA TVTTTPATTP QTQGPAPAKV PEAKSTTTTA1320
 1321 PQVSGPAVTP STATPSPAKV TSPPAATLSG TEVTPPKVAV SGTPVTLDID NTQSASEYDY1380
 1381 KDEGGVVTYT PKENHVFSKV TEGPIVLWKS DDVSGTMVRI CSKLLVILFN NNEFKLFEQS1440
 1441 EGNWIDITDK RHNLTKLKFF NDSNAQIKPT EYTVTIVELS YRIQFSQGTI CRKITLGNDI1500
 1501 IYNYQDDTDF GSIGSLDLDL VSNGFFVKNE SGDLKSVTKP VILDLETTKS TPEFDISYIE1560
 1561 GSDHIYIPKE NRVFNKVVRG PTLIWESKDN VCATIVTISS KFLSILFDNN TFKLFQESEK1620
 1621 QWTDITSDRH NVASLKFYGD NNVEIKLSDY IVSMSGLSYN FEFKTGVKCK KITLDNVTLW1680
 1681 SHTDDTQFGT IKSFSLGLVL NGFFIKNESG TVKPAEPTKV TLDIEKTQST VQLEYKVQNG1740
 1741 VVTYTGKDCH VFSKIMQGST VVWESEENLF ATKVIKDGNK NSLSINLSNG TTKEFQQSDS1800
 1801 KWTESQTSSP VTTSSSSAQT ATTETATTGT TTTTKTVLDI DIKKSTDQFQ YSNSGGFTKF1860
 1861 VARPGYGFTK VTKGNSVVFQ STRILFGTIV TYMDSCNYVS AQFINGMFKD FQLSGTKWTE1920
 1921 SKPIQSNNTP FTSFDYKVTV TNYIYEFQFN EGAECKTVKY GNVQVYRHTD HPFQRSFGSI1980
 1981 KSFSVDLVKN RFFIKNQSCS MRELPYEPPL DTKSIDTTQR LLLTRGQSTT DVIEAVDVRP2040
 2041 ITLDLTTATN NKFSRTDKDG YVTYTANPGF VFGKVTHGAN IVWESDSNIF GNLVRIKSES2100
 2101 NNMFLVILLD NSTFKLFQFS DGTVFKDITA EKRDVTKLKF LGEGGEINPS DFKVSLADFQ2160
 2161 FSYEFHDRVK CLRITLGNEC FYEHKGGFGA IKSLSLDLVL NKFSTVEVKS VSLDIDKSQS2220
 2221 TNEFDHTEKN GVSTFSPKSG HVFTKVTHSN TAIWESDGNV CATIVNTKTS DNKVFLSIFL2280
 2281 SNNMFKLFLK SSDGAFKDIT NQRHDVKKLK FLGQDDSPLK STDYSVSMSG HTFLCEFNRG2340
 2341 FNCLGVKLGN EDIWKPDGDP KFSTIKSLSL DLIDNKFSLK NESGDIKPVV IPVILDISKT2400
 2401 QSTSEFEYLK EYEFHKYTVK SCYLFTKVTE GAKVVWESND TVGGTLVTTT GEFLAILLNN2460
 2461 NLFKLFLKSS EWEDITKSRI DISGLKFLTD DSEIGTSDYK VTISCHSYIL EFNPGVECHK2520
 2521 ITHRGIDLWK SDDDQKFKSV KSLSLCLLSN QLSVTNESGT VKDLKLTSDT TETESTAPVT2580
 2581 KYITLDVDKK QSTSEFECKE KNGVTSYTAK SDIVFTKITH KTTVVWESGG NVCAILVSVK2640
 2641 AEFLAILLSN NQFKLFQKSS DGTWKDITSQ RHNISNLKFL GQGGSVLKSP DYSVSMSGLI2700
 2701 LVYEFNTKCT KIMLENENIW KPDDDPKFPK IKSLSLDIAS NKFSLKSDTA VKELELSLAT2760
 2761 STESATKSAT ATSVTDPTTQ TTPESVTGFP TKSSPESTTT TQPNVSTTTQ SVTPTPTGTT2820
 2821 VTSVTLDINT TNSTQQFECK EKNGVISYVA KSGNVFTKVT HGQTSVWESS GNVSGAMVTT2880
 2881 KKDEFIAILL DNKKFLIFQN SDNKWTDVTC DRCDLDELSF FSDDTVLTSS QYKIVLSDLS2940
 2941 YNLQFNDGVK CSKITHKGVR VWPVPDGSKT TTDTDDTTKT IDDTTSSKSA SDDTGFGFIK3000
 3001 SLHLDLVANK FSVKNESDQV KEFEYKPVKS KIITSSSGGT LSVDAVPGLY KLNLGLTQSQ3060
 3061 YDIVKVGKSF EYHFKPNVKC SMILFNDDTT SYYHPTVWNS PNQDDVFGTK VVVSDDVKYL3120
 3121 LLLLNNNMYK MFTHFYNRWV EISRDRRDVS KLKFYGIQEV SDSSSSLTVP ESDRQLTPSD3180
 3181 YKFSISDFVF SFEFNEGILC RKINLGDMIV YNYDILKTPI KSFNINLRTN QFSVNNRFGD3240
 3241 ANVELVQRPD TLITIDLNVC ETTFEYQYLK TDDDFHTYVP LFGYAFNKIV RGSNDIWEST3300
 3301 TDCSLKVVYM DSAKLLAILM DNNKFFLFQE SSGTFRDITS MRHDVSNLKF LDTRDSELTS3360
 3361 SDLKITIVNN SYRYEFKDGV RCQTVKYSDD VLWRHSDHTK FGTIVSFHLG LVSNKFFVKN3420
 3421 QSDQLKMIEY RPGTLPIVTD VNRNTSSELD IDKKGSTDRY DYENNGDDHI FTPKSGCEFS3480
 3481 KVVRGEKVIW EASENLFAKD VIFDEANNYV TIELTNGSFR TITLSDTTT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle