YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145019234, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.94
Transmembrane Helix	45	67	0.78
Non-Cytoplasmic	68	80	0.68
Transmembrane Helix	81	104	0.82
Cytoplasmic	105	117	0.65
Transmembrane Helix	118	139	0.69
Non-Cytoplasmic	140	175	0.84
Transmembrane Helix	176	197	0.88
Cytoplasmic	198	205	0.82
Transmembrane Helix	206	227	0.88
Non-Cytoplasmic	228	243	0.89
Transmembrane Helix	244	264	0.93
Cytoplasmic	265	283	0.84
Transmembrane Helix	284	304	0.92
Non-Cytoplasmic	305	332	0.91
Transmembrane Helix	333	354	0.86
Cytoplasmic	355	373	0.80
Transmembrane Helix	374	392	0.96
Non-Cytoplasmic	393	400	0.85
Transmembrane Helix	401	423	0.90
Cytoplasmic	424	451	0.90
Transmembrane Helix	452	472	0.91
Non-Cytoplasmic	473	481	0.83
Transmembrane Helix	482	502	0.90
Cytoplasmic	503	571	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQRGARLRK WSDKLAVEAE PGLTTGQLML TNHDLKPVEP ERRQWGPWNF VGFWIADSFN  60
   61 INTWMISSSM VYNGLSWWQS WLCVWIGYTI AGCFIVLTGR IGATYHIGFP VVARSSFGIW 120
  121 GNLWPVFNRA AMACIWYGVQ SYIGGRCVYI MIRSMSLNWD RDRIPNTFAE GSGTTTADYA 180
  181 SFFIFWLVSL PAIWFPVHKI RHLFTVKAYF VPVAAIAFLI WAVVRAGGVG PIVHQPAKIQ 240
  241 GSELAWEFVL GVMSSISNFA TLIVNDPDFT RFAARPKDAL WSQLFTIPVG FAVTSFIGII 300
  301 VSSGSEVIYG EAVWDPLMLL EKFIDEGGPA QRFGTFVIGL AFALAQLGTN IAANSVSAGT 360
  361 DLTALMPRYL NIRRGGYICA AVGLAMCPYT LLTDSNQFTT YLSSYSVFLS SIAGVMICDY 420
  421 YFVRRGYLEI KELYDARKTG PYYFTWGIHW RAYAAYIAGI LINVVGFAGA IGRDVPMGAT 480
  481 YIYRLNFFAG FTVSSLVYYL CCRFSPIPAT SDRWMEVGDE IDDVTVAYND NASGEYARRN 540
  541 GSNDGASGSQ DYEVKKDVSS ANRTEVDGRV V