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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38110484, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPARLSCESE KRPGSQWSPA RTRTNLVGVD RHLAHHQPSN SNAKQSSDVQ EDSDPRPGSG  60
   61 FDQNTSKTAV NDLNDDRDDH EAENGPATTR ITKRRTSAEL RSVAARSRRS GNFNWKPALS 120
  121 RDASPEQEPD LISSPSHETT VANPPRTTGD AIDGLSSTSP MMEKLSIESR GRRGPSTKTY 180
  181 RSRSPWYTSM RTLMVTLAGL FCLGLIVHSL NTRQLDPKGC RMAWMHPSYH QLDEFDTEHT 240
  241 RFASKYSLYL YRDAGIDRDT KLRGIPVLFI PGNAGSYRQV RSIASEAATY YRDVVRHDER 300
  301 ALRRGARPLD FFSVDFNEDF TAFHGRTLLD QAEYLNEAVR YILSLYLDPR KSERESGVPD 360
  361 PTSVIVIGHS MGGVVARTML TMANYQANSI NTILTMSAPH ARAPVSFDGL MVRTYREIND 420
  421 YWRHAFLKPS RENPLEQVTL VSVAGGGLDT IVPSDYASIE SLVPGTNGFT VYTSSIPTVW 480
  481 TSMDHQAIMW CDQFRKVVSR ALYDIVDIRR PSQTKGRSER MRKLKRWFLT GMESNTERDS 540
  541 AHAAASTLLI LDDTSNDITR QGERFVLRGL GSKPGGKGRA YLLPIPPPNS PAGKQLNILT 600
  601 DQRLGNSGDS SLIEVMFCSM SASSQQGQAS ATSFSTKMDL SEGDSTSSTR LACKNAAPDV 660
  661 IQLPRSTRST RYPFYLDGEQ ELLPFSYLHY DVDEIASEYQ FVAIVDKSSD PTSGFLISEF 720
  721 NDLSQSHSVQ RIGLKHLLTT GLELEMPSDR PMVTEVKIPS MRSSLLAYNL EISKKACQGK 780
  781 SSEELFTPLV RQYLTEPYES KFYVNVSRAS ISLHGVAPYV PPAMRPRVDG EDGLSLQFWT 840
  841 DPTCGASVRV KLTVDFIGSM GKLYMRYRTI FACFPLLVAA LVLRKQFNVY DETGVFIPFT 900
  901 QGLDLALRRS IPLLLAGLTI ASIVMGEREA YSSASPLSES HHQKNTTHPT AIDFDQNDLL 960
  961 IGTRDIFFWF MVPLIGLVSI GACAALNYSF LALSQLLSFL FGLLKVRFAW RNRHDGYRNG1020
 1021 SASPSSTKTS FRVCSPRRRV ITTLILLFFV ATFVPYQFAY VVCCVVQLTT TVRALRITSD1080
 1081 AQRPPSSSSA TSSEKSATNS TNLHNLNFYN YVHSILVLMI WVMPIDVPVL LVWVRNLALN1140
 1141 WMTPFSSHHN VLSIIPFIVL VETHTTGKMV PRVTSRPLRH VSGIILTGTA VYAAIYGVSY1200
 1201 AYVLHHLVNI FAAWLVAVHL TTAAAAVAGS SNGGGFASFS SSSYTISSVS SLFENGQVID1260
 1261 QKGGKIP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle