YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38099370, gi|...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEKEASEL KQQGAVEAAQ DPENSVTAED AEKLIVEESK NAGVAAFSFD PNASIQEKKA  60
   61 QIKAATELPE GIPHRKKGVA IATDIDDGSK PEYDLPSPSR AGVVDQEQNG HADANGEPVE 120
  121 DEEVMGPKTG WAPRIGWPTE AIGEAQSLLD HSTWLEGHLP DTLYGDWYHN VAIIVFASLS 180
  181 SWLVAVLGGG LGWVFILLAV CSTYYRTSIR RVRRNFRDDI TREMTLKRLD TETESLEWIN 240
  241 SFLVKFWPIY QPVLAATVIN SVDQVLSGAT PAFLDSLKLK TFTLGSKPPR MEHVKTYPKA 300
  301 EDDIVIMDWK FSFTPNDIAD LTARQIRNKI NPKVVLEIRV GKAMISKGLD VIVEDMAFSG 360
  361 IMRLKIKLQI PFPHVEKIEM CFLDKPTIDY VCKPLGGETF GFDINFIPGL EKFILEQIHG 420
  421 NLAPMMYAPN VFPIEVAKML AGSPVDQAIG VVAITLHGAQ GLKNPDNFSG TTDPYAVVTL 480
  481 NRRQPLAQTK VIRDTANPRW NETHYVIITS FNDTLDIQLF DYNDFRKDKE LGVASFQLEH 540
  541 LEEITDHENE RIEVISDGKA RGVLSCDIRF FPVLGPTKTE DGREEPPPQT NTGILRFTVE 600
  601 QAKDLDGTKS LVGLLNPYAV LLLNGKEVHS TKKLKRTNNP IWDNGSKEIL ITDQKSAKLG 660
  661 VVIKDDRDLA GDQIIGTYQI KLEDMLDLME KGKDWYDLAG VKTGRVKMQA KWKPVSISGV 720
  721 MSTGGYQTPI GVMRFHFKKA TDLRNFETVG KSDPYTRVVV SGIEKARTVT FKNDLNPEWD 780
  781 EVLYVPVHSA RDKIQLEVMD AEKMGKDRSL GLTEVFAGNF ISQDETGEYL VHDKKEPVEA 840
  841 GLRLHGKGIA KGVLHHTIAF YPCLNVADPD EDSDGEEPKP ARDSLDVPRP TEPGRITSLD 900
  901 EDHEKQPITP KTPQFPTSPT SPRTPRKSRD EHAPPKIRLS PQELLKYESG LVIFKLIEAD 960
  961 LSKSNSHVDL YVDDMAFPSY ISSLTRSKHH KFDEIGDCFI RELDFSKLTI KVREKVDKMS1020
 1021 ERQKSDDVLA KLKGSTIETL KQCLNNPTTL KMKDDDGKPC SIKVSLKYLP VKMKLDPSES1080
 1081 INNMGTLRVD VLDAQDLPSA DSNGKSDPYC KFELNGQDVF KTKTVKKTLN PTWNEFFELP1140
 1141 IPSRTAAKFK ATVWDWDFAD KPDFLGQTDI NLEQLEPFMA QELTYRLEGK SGSLRLRLLF1200
 1201 RPDYVTRTRQ GTSTFGTFGA PARIVTGVAG VPIKGGAAVA GVVGHGVGKG ASFIKGRFTR1260
 1261 KKTESSIPEV PAITMNGEDT PPVPPVPGLG LKRSTGLTLD SEPSVTPPGP ANGAPNGGHN1320
 1321 RSRSIGANSV HSMAPSSPGA GTATFTVVSA SGFPPSADTY VAVCQVGTKI KSIGKTKDRR1380
 1381 PSASNGIITY DETFKTTCTP DTQFQIQVKE KHTFKSDDDL GETIFFVDES GSNADKEVKV1440
 1441 GTGSVIIRSS FVSNDTANGL VPDSPNRSST IRRSFLGKRS ETRNVPPSRD GTP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle