YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2204284
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSFFKNQKS KNKLQPQADQ TNNEQTVSSL KNLLSENLTL IKEKTGNSSD IVIRHFKIGV  60
   61 NNSLAAAIVY IEGIVDNQAI QDYLLQSLMK DNQKNDLNDQ NALELISEDI VTMGNVSFAD 120
  121 NWNDLLSSLM SGDSLLIVDG INRVLSVSTQ GGEKRAIAES TTQMVVRGPK GAFTESIGTN 180
  181 LAMVRRIIKT PDLWLESMKI GRVTKTDVTL MYIHGIANDK VVKEIRKRLK NIDIDSILES 240
  241 GYVEQLIEDQ TVTPFPTIYN TERPDVVAGN LLEGRIAIFV DGTPFGLIAP ALFIQFFQSA 300
  301 EDYYARFDIA TSIRLLRVFM FMISLIAPAT YVAVTTFHQE MVPTTLIVAL AAQRESVPFP 360
  361 AFVEAFFMEV TFEILREAGI RLPKAIGSAV SIVGALVIGQ AAVQAGIVSP AMVIIVSITA 420
  421 IASFATPSFD MAISARLIRF LFILGAATFG FYGIILILLM GVGHLCSLRS FGVPYMTPLA 480
  481 PFIPVSNEDT LLRLPWWTMR RRPKLISDNK VRQSKHQKPE PASSRGMINQ EMEEDDQNET 540
  541

Type	Start	End	Confidence
Non-Cytoplasmic	1	276	0.54
Transmembrane Helix	277	297	0.62
Cytoplasmic	298	314	0.73
Transmembrane Helix	315	337	0.87
Non-Cytoplasmic	338	355	0.58
Transmembrane Helix	356	372	0.57
Cytoplasmic	373	381	0.72
Transmembrane Helix	382	403	0.81
Non-Cytoplasmic	404	409	0.60
Transmembrane Helix	410	429	0.90
Cytoplasmic	430	439	0.75
Transmembrane Helix	440	462	0.92
Non-Cytoplasmic	463	476	0.73
Transmembrane Helix	477	497	0.56
Cytoplasmic	498	540	0.68