YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cfz-2
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	235	0.99
Transmembrane Helix	236	257	0.96
Cytoplasmic	258	268	0.90
Transmembrane Helix	269	289	0.95
Non-Cytoplasmic	290	315	0.90
Transmembrane Helix	316	339	0.85
Cytoplasmic	340	353	0.89
Transmembrane Helix	354	375	0.91
Non-Cytoplasmic	376	401	0.89
Transmembrane Helix	402	426	0.88
Cytoplasmic	427	446	0.96
Transmembrane Helix	447	470	0.88
Non-Cytoplasmic	471	498	0.93
Transmembrane Helix	499	519	0.82
Cytoplasmic	520	550	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLRISVLFL LLGSCGALFG KRQKCEQITI PLCKGIGYNM TSFPNSYGHE KQEEAGLEVH  60
   61 QFYPLVEVGC FQHLKFFLCT MYTPICQENY DKPILPCMEL CVEARSKCSP IMAKYGFRWP 120
  121 ETLSCEALPK MSDQMSTGNI CAAPPDTPKK QHKGHHHKNQ NQNQNQNHNY SPDGPEVGIS 180
  181 KIDNEVIAGP SECQCTCNQP FQFVASEKSK VGNVTNCAYS CHSPALAESH SLVSNWMAFW 240
  241 SITCCVLASF TFLTFLIETD RFQYPERPIF MLAFCQLMVA VGFMIRYFVG HEEIACDSMR 300
  301 IKGADDNSGS LCFVVFLLTY FFGMAASVWW VILSLTWVLS AASKWSPEAI SSFSFHFHVV 360
  361 GWCLPAIQTV LVIVFNAIDG DPITGICYVG NTDLQFQRIF VLFPLLVYFI VGVLFLVIGF 420
  421 CNLWSIRNEV QKQHPSLESA HKITQLMSKI GIFSLLYTIP SLLIICVLFY EQNHRSLWEQ 480
  481 SQLCSCSPKQ TIGDSSLIIS LIKTCCMCIL GWTSGFWVCS TKTLSSWKNA ICCLVFLKEK 540
  541 FLQIILISQI