YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OST3A_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIQTNLSYR FFILIVFLFT LANPKSDSDL KNELVSLRST AESGVISFNN DDVSKFITSV  60
   61 STPRPYSLII FFDAVHLHGN SQLRLPEFRR EFRLVSATFI TNNNNESNGT KLFFCEIEST 120
  121 HSEASFRRFA VESLPHISLV SPTTENLTES DQMDGGDFTG LAESMAEFVE RQTKLTVCSI 180
  181 QRPPLISKTQ IGIIVAIIII STPILIKKIL KGETLLHDHR IWLVGAVFVY FFSVSGTMHN 240
  241 IIREMPMYIK DYEDSSKFVF FIEESEMQLG AEGFFVGFLY TVVGLLLAFV TNVVVRVKKL 300
  301 DEQRMAMLLA LSISFWAVRK VVYLDNWKTG YEIYPYWPSS WRG

Type	Start	End	Confidence
Signal Peptide	1	24	0.89
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	188	0.98
Transmembrane Helix	189	210	0.88
Cytoplasmic	211	220	0.89
Transmembrane Helix	221	242	0.91
Non-Cytoplasmic	243	273	0.96
Transmembrane Helix	274	295	0.92
Cytoplasmic	296	304	0.89
Transmembrane Helix	305	323	0.62
Non-Cytoplasmic	324	343	0.62