YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P2C14_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNKLRSEET ITSLSSFMAS TLSIASPSPC SIPLSVTKVS PLKRKRPTHL NIPDLNPQQP  60
   61 ISTDYFRFRE GDAKVSPLKR KRPAHLNIPD LNPQQPIRTD YFSFTDFAHQ NGTVSFGGNG 120
  121 FGVVSRNGKK KFMEDTHRIV PCLVGNSKKS FFGVYDGHGG AKAAEFVAEN LHKYVVEMME 180
  181 NCKGKEEKVE AFKAAFLRTD RDFLEKGVVS GACCVTAVIQ DQEMIVSNLG DCRAVLCRAG 240
  241 VAEALTDDHK PGRDDEKERI ESQGGYVDNH QGAWRVQGIL AVSRSIGDAH LKKWVVAEPE 300
  301 TRVLELEQDM EFLVLASDGL WDVVSNQEAV YTVLHVLAQR KTPKESEEEN LVQGFVNMSP 360
  361 SSKLRRASLV KSPRCAKSQS YYYNSENESP SLNREIGSSP SKSPITPWKS LWAKAACKEL 420
  421 ANLAAKRGSM DDITVVIIDL NHYKG

Type	Start	End	Confidence
Signal Peptide	1	27	0.83
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	445	0.99