YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.85
Transmembrane Helix	36	58	0.86
Non-Cytoplasmic	59	67	0.71
Transmembrane Helix	68	91	0.81
Cytoplasmic	92	108	0.66
Transmembrane Helix	109	131	0.93
Non-Cytoplasmic	132	147	0.75
Transmembrane Helix	148	167	0.88
Cytoplasmic	168	177	0.65
Transmembrane Helix	178	202	0.86
Non-Cytoplasmic	203	207	0.71
Transmembrane Helix	208	230	0.91
Cytoplasmic	231	250	0.75
Transmembrane Helix	251	272	0.88
Non-Cytoplasmic	273	289	0.72
Transmembrane Helix	290	311	0.81
Cytoplasmic	312	330	0.62
Transmembrane Helix	331	354	0.89
Non-Cytoplasmic	355	372	0.68
Transmembrane Helix	373	396	0.86
Cytoplasmic	397	403	0.62
Transmembrane Helix	404	426	0.87
Non-Cytoplasmic	427	434	0.54
Transmembrane Helix	435	459	0.88
Cytoplasmic	460	502	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METDFSLVRK EEEEEEDNRN GMSYLSMEMM KKVSSMAAPM VAVSVSQFLL QVISMVMAGH  60
   61 LDELSLSAVA IATSLTNVTG FSLIVGFAGA LDTLCGQAFG AEQFGKIGAY TYSSMLCLLV 120
  121 FCFSISIVWF FMDKLLEIFH QDPLISQLAC RYSIWLIPAL FGFTLLQPMT RYFQSQGITL 180
  181 PLFVSSLGAL CFHIPFCWLL VYKLKFGIVG AALSIGFSYW LNVFLLWIFM RYSALHREMK 240
  241 NLGLQELISS MKQFIALAIP SAMMICLEWW SFEILLLMSG LLPNSKLETS VISICLTTSA 300
  301 VHFVLVNAIG ASASTHVSNE LGAGNHRAAR AAVNSAIFLG GVGALITTIT LYSYRKSWGY 360
  361 VFSNEREVVR YATQITPILC LSIFVNSFLA VLSGVARGSG WQRIGGYASL GSYYLVGIPL 420
  421 GWFLCFVMKL RGKGLWIGIL IASTIQLIVF ALVTFFTNWE QEATKARDRV FEMTPQVKGN 480
  481 QKTQIIVEED TQVLLNHIAE TV