YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42570561
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.89
Transmembrane Helix	13	32	0.91
Non-Cytoplasmic	33	66	0.93
Transmembrane Helix	67	86	0.90
Cytoplasmic	87	95	0.81
Transmembrane Helix	96	116	0.95
Non-Cytoplasmic	117	157	0.93
Transmembrane Helix	158	182	0.85
Cytoplasmic	183	191	0.76
Transmembrane Helix	192	215	0.85
Non-Cytoplasmic	216	264	0.94
Transmembrane Helix	265	286	0.92
Cytoplasmic	287	297	0.87
Transmembrane Helix	298	320	0.89
Non-Cytoplasmic	321	325	0.89
Transmembrane Helix	326	347	0.89
Cytoplasmic	348	355	0.78
Transmembrane Helix	356	374	0.64
Non-Cytoplasmic	375	394	0.54
Transmembrane Helix	395	418	0.86
Cytoplasmic	419	426	0.56
Transmembrane Helix	427	449	0.74
Non-Cytoplasmic	450	469	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEQKMKQL SRFWIWALSS IAFRLILISF PGNLNLSSRP EVSTPLTSIR RLAEGYWLKQ  60
   61 ASMSPYAGSM YHGSPLLLSV LGPLTVQRIK GQPSHLLCSL VFVIADILSA MLLRAIGQKL 120
  121 QMAYGLNARL LGFLKSSRDK VILPCGDIAA LVYLWNPFTI VSCVGLSTSP IENLAVILAL 180
  181 FGAVTRRVPL AAFGLVIATH LSLYPATLTI PIIFLLGYGL DAPPIKLFLQ TRSVENEESS 240
  241 TSTVSKQAKL KQTTHLPFLW KTVAHFLFWV LLWSLYVLIL CALSLNKYGG LEEMFKRTYG 300
  301 FILSIEDLSP NIGVFWYFFA EVFDFFRNFF LIVLHVNILF MLLPLAIRLK HRPCFLAFIY 360
  361 LAISSILKSY PSVGDSALYL SLWALFVNEL LDMKFSFFLF CGYLGISLLS PVMHNLWIWR 420
  421 GTGNANFYFG NAIGYACFQI VFVVESVSAM LNHDRALKRS NSNHREVKS