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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|15219165
Protein type: Transmembrane
Type Confidence: 0.75
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPDVVEIPP PPLIASGSRT RKPRKAVPEV IDVESYEFRN VGVVKDNNVV DKKNKGKAIQ  60
   61 VDSFSFNNVQ SHHHGSSLLN LETFQDYYGH KNIPFSEFAN QPIDVDDYSM YQDVLDPKDV 120
  121 PAGAEVTVPW GLNSSSKGTA KSSISIMRSQ SMKGYGTVSL ATTNVPQLWD YTLPQQNQAI 180
  181 YSSVSFSAVQ PQTPDVVMVT NPTPNPFSYD ASASSSHPIA AEPISSVQDS SNARKLKEEF 240
  241 LRDFKRFDTV EDFSDHHYAS KGKSSKQHSK NWVKKVQADW KILENDLPEA ISVRACESRM 300
  301 DLLRAVIIGA EGTPYHDGLF FFDIQFPDTY PSVPPNVHYH SGGLRINPNL YNCGKVCLSL 360
  361 LGTWAGSARE KWLPNESTML QLLVSIQALI LNEKPYFNEP GYVQSAGTAS GESKSKVYSE 420
  421 NVFLLSLKTM VYSIRRPPQH FEEYVQNHYF VRSHDIVKAC NAYKAGAPLG SMVKGGVQDL 480
  481 EEARQSGSKK FKTDVASFMQ TVVDEFVKLG VKELAEKPEP PMSNANTENQ SKKKTRKRSR 540
  541 SSSQKEPDMV EIKDSSNVRK LKEEFLRDFK RFDTVEDFSD HHYAAEGSPA KLSLWHLKFK 600
  601 GRPKNWVKDI QKEWKILDKN LPETIFVRAC ESRIDLLRAV IIGAEGTPYH DGLFFFDIQF 660
  661 PDTYPSVPPK VHYHSGGLRI NPNLYKCGKV CLSLISTWTG KKREKWLPKE STMLQLLVSI 720
  721 QALILNEKPY YNEPGYEKSM GTPLGESYSK DYSENVFVFS LKTMHFEEFV RSHFFVRSHD 780
  781 IVKACNAYKD GAPVGSIDKG GVKKQTRQRG SLKFRINVTS FMKTVVDEFV NLGAIREANH 840
  841 RGFLYGISFF ITIVAFFGSW VYVCLADLVS LFAHYSSSVK KLKEEFLRNF KRFDSVEDFS 900
  901 DHHYVSKGKA SKQHSKNWVK KVQDEWKILN QNLPETIFVR ACESRMDLLR AVIIGAEGTP 960
  961 YHDGLFFFDI QFPDTYPSVP PNVYYHSGGL RINPNLYNCG KVLVSIQALV LNEQPYFNEP1020
 1021 GYGLIKGTWL GESKSKVYSE NVFLLSLKTM VYSMRKPPQH FEEYVQNHYF VRSHDIVKAC1080
 1081 NAYKAGAPLG SMVKGGVQDL EQARQSGSKK FKTDVASFMQ TVVDEFVKLG VKELAEKPKP1140
 1141 PVNNANTENQ SKKKTRKRSR SSR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle