YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERDL1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	45	0.86
Non-Cytoplasmic	46	65	0.90
Transmembrane Helix	66	87	0.89
Cytoplasmic	88	96	0.79
Transmembrane Helix	97	115	0.95
Non-Cytoplasmic	116	121	0.83
Transmembrane Helix	122	143	0.90
Cytoplasmic	144	153	0.78
Transmembrane Helix	154	173	0.89
Non-Cytoplasmic	174	179	0.70
Transmembrane Helix	180	200	0.92
Cytoplasmic	201	262	0.95
Transmembrane Helix	263	286	0.85
Non-Cytoplasmic	287	297	0.82
Transmembrane Helix	298	318	0.93
Cytoplasmic	319	325	0.90
Transmembrane Helix	326	347	0.93
Non-Cytoplasmic	348	359	0.87
Transmembrane Helix	360	383	0.91
Cytoplasmic	384	393	0.80
Transmembrane Helix	394	413	0.93
Non-Cytoplasmic	414	422	0.76
Transmembrane Helix	423	445	0.91
Cytoplasmic	446	464	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGSMKTPL VNNQEEARSS SSITCGLLLS TSVAVTGSFV YGCAMSYSSP AQSKIMEELG  60
   61 LSVADYSFFT SVMTLGGMIT AAFSGKIAAV IGRRQTMWIA DVFCIFGWLA VAFAHDKMLL 120
  121 NIGRGFLGFG VGLISYVVPV YIAEITPKAF RGGFSFSNQL LQSFGISLMF FTGNFFHWRT 180
  181 LALLSAIPCG IQMICLFFIP ESPRWLAMYG RERELEVTLK RLRGENGDIL EEAAEIRETV 240
  241 ETSRRESRSG LKDLFNMKNA HPLIIGLGLM LLQQFCGSSA ISAYAARIFD TAGFPSDIGT 300
  301 SILAVILVPQ SIIVMFAVDR CGRRPLLMSS SIGLCICSFL IGLSYYLQNH GDFQEFCSPI 360
  361 LIVGLVGYVL SFGIGLGGLP WVIMSEVFPV NVKITAGSLV TVSNWFFSWI IIFSFNFMMQ 420
  421 WSAFGTYFIF AGVSLMSFVF VWTLVPETKG RTLEDIQQSL GQLS