YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR15_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.97
Transmembrane Helix	40	63	0.84
Non-Cytoplasmic	64	83	0.80
Transmembrane Helix	84	102	0.95
Cytoplasmic	103	111	0.72
Transmembrane Helix	112	133	0.88
Non-Cytoplasmic	134	157	0.93
Transmembrane Helix	158	180	0.86
Cytoplasmic	181	198	0.92
Transmembrane Helix	199	220	0.93
Non-Cytoplasmic	221	227	0.86
Transmembrane Helix	228	251	0.89
Cytoplasmic	252	336	0.97
Transmembrane Helix	337	358	0.87
Non-Cytoplasmic	359	385	0.85
Transmembrane Helix	386	406	0.86
Cytoplasmic	407	419	0.84
Transmembrane Helix	420	440	0.90
Non-Cytoplasmic	441	458	0.84
Transmembrane Helix	459	482	0.87
Cytoplasmic	483	492	0.79
Transmembrane Helix	493	516	0.78
Non-Cytoplasmic	517	543	0.84
Transmembrane Helix	544	563	0.88
Cytoplasmic	564	601	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVHDLSEEA KRGVIHTSEE SLDDLCVDFR GRPCRPSKHG GTRAALFVLG FQAFEMMAIA  60
   61 AVGNNLITYV FNEMHFPLSK SANLVTNFIG TVFLLSLLGG FLSDSYLGSF RTMLVFGVIE 120
  121 ISGFILLSVQ AHLPELRPPE CNMKSTTIHC VEANGYKAAT LYTALCLVAL GSGCLKPNII 180
  181 SHGANQFQRK DLRKLSSFFN AAYFAFSMGQ LIALTLLVWV QTHSGMDVGF GVSAAVMAAG 240
  241 MISLVAGTSF YRNKPPSGSI FTPIAQVFVA AITKRKQICP SNPNMVHQPS TDLVRVKPLL 300
  301 HSNKFRFLDK ACIKTQGKAM ESPWRLCTIE QVHQVKILLS VIPIFACTII FNTILAQLQT 360
  361 FSVQQGSSMN THITKTFQIP PASLQAIPYI ILIFFVPLYE TFFVPLARKL TGNDSGISPL 420
  421 QRIGTGLFLA TFSMVAAALV EKKRRESFLE QNVMLSIFWI APQFLIFGLS EMFTAVGLVE 480
  481 FFYKQSSQSM QSFLTAMTYC SYSFGFYLSS VLVSTVNRVT SSNGSGTKEG WLGDNDLNKD 540
  541 RLDHFYWLLA SLSFINFFNY LFWSRWYSCD PSATHHSAEV NSLEALENGE IKDSTTEKPR 600
  601 I