YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15223394
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.91
Transmembrane Helix	45	63	0.86
Non-Cytoplasmic	64	78	0.79
Transmembrane Helix	79	103	0.82
Cytoplasmic	104	118	0.88
Transmembrane Helix	119	142	0.91
Non-Cytoplasmic	143	154	0.82
Transmembrane Helix	155	177	0.88
Cytoplasmic	178	184	0.93
Transmembrane Helix	185	206	0.92
Non-Cytoplasmic	207	214	0.72
Transmembrane Helix	215	236	0.89
Cytoplasmic	237	254	0.89
Transmembrane Helix	255	274	0.90
Non-Cytoplasmic	275	293	0.77
Transmembrane Helix	294	316	0.90
Cytoplasmic	317	333	0.80
Transmembrane Helix	334	351	0.82
Non-Cytoplasmic	352	364	0.63
Transmembrane Helix	365	388	0.78
Cytoplasmic	389	396	0.54
Transmembrane Helix	397	416	0.93
Non-Cytoplasmic	417	421	0.66
Transmembrane Helix	422	442	0.91
Cytoplasmic	443	475	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRGGELTE ALVKKTGREE EDELGMKEKV WIESKKLWVV AAPAIFTRYS TFGVSMVTQA  60
   61 FIGHLGPTEL AAYSITFTIL LRFSNGILLG MAGALGTLCG QAYGAKQYQM LGIYLQRSWI 120
  121 VLTGGTICLM PVFIFAGPIL LALGQEERIV RVARVLALWV IGINFSFVPS FTCQMFLQAQ 180
  181 SKNKIISYVT AVSLGLHVFF SWLLVAHFNF GITGAMTSML IAFWLPIIVQ LLYVTCGGCK 240
  241 DTWRGFSMLA FKDLWPVLKL SLSSGGMLCL ELWYNSVLVL LTGNLKNAEV ALDALAICIS 300
  301 INALEMMIAL GFLAAVSVRV SNELGSGNPK GAKFATLIAV FTGRISYIFT TSEAVAAEVA 360
  361 DLSPLLAFSI LLNSVQPVLS GVAIGAGWQG YVAYVNLACY YLVGIPIGVI LGYVVGLQVK 420
  421 GVWIGMLFGI FVQTCVLTVM TLRTDWDQQV STSLRNINRW VVPESRDANQ ISSEE