YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42571729
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.98
Transmembrane Helix	40	65	0.78
Non-Cytoplasmic	66	81	0.67
Transmembrane Helix	82	102	0.76
Cytoplasmic	103	121	0.78
Transmembrane Helix	122	144	0.90
Non-Cytoplasmic	145	157	0.79
Transmembrane Helix	158	180	0.89
Cytoplasmic	181	187	0.91
Transmembrane Helix	188	209	0.93
Non-Cytoplasmic	210	225	0.77
Transmembrane Helix	226	246	0.78
Cytoplasmic	247	257	0.72
Transmembrane Helix	258	280	0.81
Non-Cytoplasmic	281	294	0.68
Transmembrane Helix	295	319	0.85
Cytoplasmic	320	336	0.76
Transmembrane Helix	337	360	0.92
Non-Cytoplasmic	361	383	0.76
Transmembrane Helix	384	405	0.80
Cytoplasmic	406	412	0.65
Transmembrane Helix	413	434	0.87
Non-Cytoplasmic	435	440	0.67
Transmembrane Helix	441	461	0.90
Cytoplasmic	462	490	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARREGEVTE TLLKKSTENR GEDRDGLGMK EKVWRESKKL WVVAGPAIFT RFSTSGLSLI  60
   61 SQAFIGHLGS TELAAYSITL TVLLRFSNGI LLGMASALET LCGQAYGAKQ YHMLGIYLQR 120
  121 SWIVLTGCTI CLMPIYIFAG PILLALGQEE RLVRVARIIA LWVIGINISF VPSFTCQMFL 180
  181 QAQSKNKIIA YVAAVSLGVH VFLSWLLVVH FDFGIAGAMT SSLVAHWLPN IAQVLFVTCG 240
  241 GCTETWRGFS WLAFKDLWPV FKLSVSSGGM ICLELWYNSI LILLTGNLKN AEVALNALAI 300
  301 CININALEMM VAFGFMAAAS VRVSNEIGSG NSNGAKFATM VVVSTSLSIG IIFFFIFLFL 360
  361 RERVSYIFTT SEAVATQVAD LSPLLAFSIL LNSIQPVLSG VAVGAGWQKY VTVVNLACYY 420
  421 LVGIPSGLFL GYVVGLQVKG VWLGMIFGIF VQTCVLTVMT MRTDWDQQVC KSNIIGFLVE 480
  481 NYKYFFLVII