YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1063254, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCMRLFSKRK NNTDSKDKQN TDERNQEQQQ EKERPVLISP SLAKNIAETK KEVGSSSDVI  60
   61 IREIKIGEQD HVHLAVIYIS GLVDNNTIHE SLIDPLVQDE SIQNTHAIQE ILRKTAPLGG 120
  121 VKAEKSWDKL FSELMLGNAL IFADGHDEAL ICSTQGGEQR SIQEPSTQVS FRGPRQGFTE 180
  181 SLQTNISMIR RYIKNPNLWV GKMEKGSVTN TDIALMYIQG ICDEKVLKEV KQRLEKIDID 240
  241 SILESGYIEQ LIEDETFTTF PTMYHTERPD VVAGNLLEGR FAIIVDGTPF VLIAPALFVQ 300
  301 FFQSVEDYYS RFDIATSIRI LRVLVFFISL VAPAVYVAAT TFHQEMIPTQ LLVVIAAQRE 360
  361 IVPFPAVVEA LTMEVAFKIL REAGVRLPRV VGSAVSIVGA LVIGQAAVQA GIVSPAMVII 420
  421 VALTAIASFA TPAFAMAISA RLIRFIFIIA SAVMGFYGLI LGIIMMFVHL CSLRSFGVPY 480
  481 MSPLAPFSSQ GVKDALFRVP WWADEKRPES VSKEDKVRQG KDQRPEPAAS RGMVNKDLEE 540
  541 GDQNGT

Type	Start	End	Confidence
Non-Cytoplasmic	1	281	0.56
Transmembrane Helix	282	302	0.64
Cytoplasmic	303	319	0.71
Transmembrane Helix	320	340	0.93
Non-Cytoplasmic	341	360	0.54
Transmembrane Helix	361	377	0.62
Cytoplasmic	378	386	0.79
Transmembrane Helix	387	408	0.88
Non-Cytoplasmic	409	415	0.69
Transmembrane Helix	416	438	0.89
Cytoplasmic	439	444	0.84
Transmembrane Helix	445	469	0.89
Non-Cytoplasmic	470	546	0.86