YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CALS7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	501	0.84
Transmembrane Helix	502	522	0.88
Non-Cytoplasmic	523	536	0.79
Transmembrane Helix	537	561	0.84
Cytoplasmic	562	572	0.88
Transmembrane Helix	573	592	0.93
Non-Cytoplasmic	593	619	0.89
Transmembrane Helix	620	641	0.92
Cytoplasmic	642	675	0.86
Transmembrane Helix	676	697	0.83
Non-Cytoplasmic	698	726	0.75
Transmembrane Helix	727	746	0.88
Cytoplasmic	747	750	0.68
Transmembrane Helix	751	773	0.86
Non-Cytoplasmic	774	1494	0.73
Transmembrane Helix	1495	1518	0.88
Cytoplasmic	1519	1546	0.49
Transmembrane Helix	1547	1570	0.69
Non-Cytoplasmic	1571	1576	0.41
Transmembrane Helix	1577	1599	0.67
Cytoplasmic	1600	1638	0.63
Transmembrane Helix	1639	1658	0.70
Non-Cytoplasmic	1659	1666	0.64
Transmembrane Helix	1667	1688	0.91
Cytoplasmic	1689	1742	0.76
Transmembrane Helix	1743	1763	0.69
Non-Cytoplasmic	1764	1771	0.76
Transmembrane Helix	1772	1792	0.93
Cytoplasmic	1793	1811	0.86
Transmembrane Helix	1812	1833	0.90
Non-Cytoplasmic	1834	1839	0.64
Transmembrane Helix	1840	1861	0.86
Cytoplasmic	1862	1876	0.91
Transmembrane Helix	1877	1898	0.92
Non-Cytoplasmic	1899	1933	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTSSGGRG EDGRPPQMQP VRSMSRKMTR AGTMMIEHPN EDERPIDSEL VPSSLASIAP  60
   61 ILRVANDIDQ DNARVAYLCR FHAFEKAHRM DPTSSGRGVR QFKTYLLHKL EEEEEITEHM 120
  121 LAKSDPREIQ LYYQTFYENN IQDGEGKKTP EEMAKLYQIA TVLYDVLKTV VPQARIDDKT 180
  181 LRYAKEVERK KEQYEHYNIL PLYALGAKTA VMELPEIKAA ILAVCNVDNL PRPRFHSASA 240
  241 NLDEVDRERG RSFNDILEWL ALVFGFQRGN VANQREHLIL LLANIDVRKR DLENYVEIKP 300
  301 STVRKLMEKY FKNYNSWCKY LRCDSYLRFP AGCDKQQLSL LYIGLYLLIW GEASNVRFMP 360
  361 ECLCYIFHNM ANEVHGILFG NVYPVTGDTY EAGAPDEEAF LRNVITPIYQ VLRKEVRRNK 420
  421 NGKASHSKWR NYDDLNEYFW DKRCFRLKWP MNFKADFFIH TDEISQVPNQ RHDQVSHGKR 480
  481 KPKTNFVEAR TFWNLYRSFD RMWMFLVLSL QTMIIVAWHP SGSILAIFTE DVFRNVLTIF 540
  541 ITSAFLNLLQ ATLDLVLSFG AWKSLKFSQI MRYITKFLMA AMWAIMLPIT YSKSVQNPTG 600
  601 LIKFFSSWVG SWLHRSLYDY AIALYVLPNI LAAVFFLLPP LRRIMERSNM RIVTLIMWWA 660
  661 QPKLYIGRGM HEEMFALFKY TFFWVMLLLS KLAFSYYVEI LPLVNPTKLI WDMHVVNYEW 720
  721 HEFFPNATHN IGVIIAIWGP IVLVYFMDTQ IWYAIFSTLF GGIYGAFSHL GEIRTLGMLR 780
  781 SRFKVVPSAF CSKLTPLPLG HAKRKHLDET VDEKDIARFS QMWNKFIHTM RDEDLISDRE 840
  841 RDLLLVPSSS GDVTVVQWPP FLLASKIPIA LDMAKDFKGK EDVDLFKKIK SEYYMHYAVV 900
  901 EAYETVRDII YGLLQDESDK RIVREICYEV DISIQQHRFL SEFRMTGMPL LSDKLEKFLK 960
  961 ILLSDYEEDD YKSQIINVLQ DIIEIITQDV MVNGHEILER AHLQSGDIES DKKEQRFEKI1020
 1021 DLSLTQNISW REKVVRLLLL LTVKESAINI PQSLEARRRM TFFANSLFMN MPDAPRVRDM1080
 1081 LSFSVLTPYY KEDVLYSEEE LNKENEDGIT ILFYLQRIYP EEWSNYCERV NDLKRNLSEK1140
 1141 DKAEQLRQWV SYRGQTLSRT VRGMMYYRVA LELQCFQEYT EENATNGGYL PSESNEDDRK1200
 1201 AFSDRARALA DLKFTYVVSC QVYGNQKKSS ESRDRSCYNN ILQLMLKYPS LRVAYIDERE1260
 1261 ETVNGKSQKV FYSVLLKGCD KLDEEIYRIK LPGPPTEIGE GKPENQNHAI IFTRGEALQT1320
 1321 IDMNQDNYFE ECFKMRNVLQ EFDEGRRGKR NPTILGLREH IFTGSVSSLA WFMSNQETSF1380
 1381 VTIGQRVLAN PLRVRFHYGH PDIFDRIFHI TRGGISKASK IINLSEDIFA GYNSTLRGGY1440
 1441 VTHHEYIQAG KGRDVGMNQI SFFEAKVANG NGEQTLSRDV YRLGRRFDFY RMLSFYFTTV1500
 1501 GFYFSSMITV LTVYVFLYGR LYLVLSGLEK NILQSASVHE SNALEQALAA QSVFQLGFLM1560
 1561 VLPMVMEIGL EKGFRTALGD FIIMQLQLAS VFFTFQLGTK AHYFGRTILH GGSKYRATGR1620
 1621 GFVVFHAKFA ENYRLYSRSH FVKGLELVIL LVVYQVYGTS YRSSSTYMYI TFSMWFLVTS1680
 1681 WLFAPFIFNP SGFEWQKTVD DWTDWKRWMG NRGGIGIVLD KSWESWWDIE QEHLKHTNLR1740
 1741 GRVLEILLAL RFLLYQYGIV YHLNIARRHT TFLVYGLSWA ILLSVLLVLK MVSMGRRKFG1800
 1801 TDFQVMFRIL KALLFLGFLS VMTVLFVVCG LTISDLFASI LAFLPTGWAI LLIGQALRSV1860
 1861 FKGLGFWDSV KELGRAYEYI MGLVIFTPIA VLSWFPFVSE FQTRLLFNQA FSRGLQISMI1920
 1921 LAGKKDKETP STK