YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BIOF_ARATH
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADHSWDKTV EEAVNVLESR QILRSLRPIC MSRQNEEEIV KSRANGGDGY EVFDGLCQWD  60
   61 RTSVEVSVSI PTFQKWLHDE PSNGEEIFSG DALAECRKGR FKKLLLFSGN DYLGLSSHPT 120
  121 ISNAAANAVK EYGMGPKGSA LICGYTTYHR LLESSLAQLK KKEDCLVCPT GFAANMAAMV 180
  181 AIGSVASLLA ASGKPLKNEK VAIFSDALNH ASIIDGVRLA ERQGNVEVFV YRHCDMYHLN 240
  241 SLLSNCKMKR KVVVTDSLFS MDGDFAPMEE LSQLRKKYGF LLVIDDAHGT FVCGENGGGV 300
  301 AEEFNCEADV DLCVGTLSKA AGCHGGFIAC SKKWKQLIQS RGRSFIFSTA IPVPMAAAAY 360
  361 AAVVVARKEI WRRKAIWERV KEFKELSGVD ISSPIISLVV GNQEKALKAS RYLLKSGFHV 420
  421 MAIRPPTVPP NSCRLRVTLS AAHTTEDVKK LITALSSCLD FDNTATHIPS FLFPKL

Type	Start	End	Confidence
Non-Cytoplasmic	1	344	0.90
Transmembrane Helix	345	366	0.87
Cytoplasmic	367	476	0.88