YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FRO7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.97
Transmembrane Helix	33	55	0.88
Non-Cytoplasmic	56	79	0.86
Transmembrane Helix	80	101	0.94
Cytoplasmic	102	120	0.94
Transmembrane Helix	121	154	0.80
Non-Cytoplasmic	155	181	0.85
Transmembrane Helix	182	203	0.88
Cytoplasmic	204	223	0.78
Transmembrane Helix	224	245	0.92
Non-Cytoplasmic	246	259	0.80
Transmembrane Helix	260	283	0.88
Cytoplasmic	284	292	0.76
Transmembrane Helix	293	311	0.81
Non-Cytoplasmic	312	314	0.54
Transmembrane Helix	315	333	0.79
Cytoplasmic	334	368	0.64
Transmembrane Helix	369	383	0.31
Non-Cytoplasmic	384	455	0.68
Transmembrane Helix	456	477	0.70
Cytoplasmic	478	575	0.90
Transmembrane Helix	576	600	0.86
Non-Cytoplasmic	601	611	0.78
Transmembrane Helix	612	634	0.93
Cytoplasmic	635	747	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDHETPLLS KDLSSSSSSS SSSSSVVVSS LKWILKVVMS VIFVTWVVFL MMYPGSLGDQ  60
   61 ILTNWRAISS NTLFGLTGSM FLIFSGPILV IAILASLYLI ISGEETVFTK KKITKFPRFR 120
  121 LWTFPVLVDG PFGVVSAAEF LGIMVFSVFF LWAIYAYTLR NLNVLDYFHV LPNNRSIFLL 180
  181 ELTGLRFGMI GLLCMVFLFL PISRGSILLR LIDIPFEHAT RYHVWLGHIT MTFFSLHGLC 240
  241 YVVGWTIQGQ LLELLFEWKA TGIAVLPGVI SLVAGLLMWV TSLHTVRKNY FELFFYTHQL 300
  301 YIVFVVFLAL HVGDYLFSIV AGGIFLFILD RFLRFYQSRR TVDVISAKSL PCGTLELVLS 360
  361 KPPNMRYNAL SFIFLQVKEL SWLQWHPFSV SSSPLDGNHH VAVLIKVLGG WTAKLRDQLS 420
  421 TLYEAENQDQ LISPESYPKI TTCVEGPYGH ESPYHLAYEN LVLVAGGIGI TPFFAILSDI 480
  481 LHRKRDGKDC LPGKVLVVWA IKNSDELSLL SAIDIPSICH FFSKKLNLEI HIYVTRQSEP 540
  541 CLEDGMVHKV VHPSVKTPWT NGCSMSVLVG TGDNIWSGLY LIISTIGFIA MITLVDIFYI 600
  601 NKYNITTWWY KGLLFVVCMV ASVLIFGGLV VVFWHRWEHK TGEVEANGND KVDLNGEETH 660
  661 NPSAAELKGL AIEEDVQNYT TIRYGTRPAF REIFESLNGK WGSVDVGVIV CGPATLQTTV 720
  721 AKEIRSHSIW RSANHPLFHF NSHSFDL