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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ATR_ARATH
Protein type: Transmembrane
Type Confidence: 0.60
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDDNNLSS LVHELRERVA ASASTPANNL RHSSGDEDAL EIRFRAVIPN LLNTYVVPSL  60
   61 GNGREVTAVL KLVGHTARNI PGVFYHGTPS AILPVIARII PFFAEPEFVP GHGVLLETVG 120
  121 SLLMLLRSNS RKAYRIFFHD ALQAIQDMQP IASLHSIEPE VCESHIPFRC FCMSFSGIGG 180
  181 DLPDANKPRD GDGLVLNLLG ANRWQPFATC ILKLICKCLT EGTLYVQGLI HTSFFKAACS 240
  241 LVCCGGADVQ MACFEFATLV GSILTFNILP HVALIQSIIL LLSADEGLPV YRNTIYDSTI 300
  301 GRFLTAVYSS CSDAAVKLTA ESLVLVLSHA LQRTKSEELK ASLCSAYVRI VKSCPPCIWK 360
  361 IHCLLELLHL PEPCFQLIEC FKAVLIVLGP GCVRVETTKC GSHTSATSDR PVQGINAGKK 420
  421 RHIEDESTYK RKRQKVGDDI RRGVYFAPEF ADETDGKDAA SLREMLISTV ESLKPPPAGP 480
  481 SLSQTESSIV ALSMLTNAFC FCPWTDMTHR LFNQMYAWIP WIAGQVEETN PIMFDISIYL 540
  541 EGIHNLLLVG VDPQYEYTSK GNDLVAIQFL LKLPWTHYML FKTPSSLVKS KCLSVGIWTK 600
  601 LGLQDGSDFD IFSWSLSDDF EQVQAVAAIS MPLKVLFSGL GALLHMFPKL EHLLEEKELM 660
  661 IKKAIPQSLG FLSCLYGSST TDSEKTACHL LLHEDLKKDE TLNSLLQGFR CSKCDKFIER 720
  721 EDEKHFRIIE TPEMVKLKMD HHRDYFNLQS LYFNLLYDES SEETQLACVE VIRRILGHTS 780
  781 PDILVRTRSQ WIRCLQYLLV HVNTDVREAF CAQIGIFVQH PIVSCLFLSE DATEKSCERN 840
  841 FFNLIEHSLA AAKDLLVIQT LLETTAEVMV AVDVTSELFL ICLFLLIDQL DHPNLIVRIN 900
  901 ASKLINRSCY IHVKGGFATL LSTASHIQNE LFDNLSVRLT SRPNVVREFA EAVLGVETEE 960
  961 LVRKMVPAVL PKLLVYWQEN AQAANTLNEL AKLIDTDVVP LIVNWLPRVL AFALNQEEDK1020
 1021 NLLSVLQLYH SQIGSDNQEI FAAALPALLD ELVCFVDIAD TPETDRRLQR LPDAIKKISK1080
 1081 VLTNAEDLPG FLQNHFVGLL NSIDRKMLHA DDIFLQKQAL KRIKLLIEMM GHYLSTYVPK1140
 1141 LMVLLMHAIE KDALQSEGLL VLHFFTRKLA DVSPSSIKYV ISQIFAALIP FLEKEKEGPH1200
 1201 VYLDEVVKIL EELVLKNRDI VKEHICEFPL LPSIPSLGEL NNAIQEARGL MSLKDQLRDI1260
 1261 VNGMKHENLN VRYMVACELS KLLYNRNEDV AALIAGELVS DMEILSSLIT YLLQGCAEES1320
 1321 RTTVGQRLKL VCADCLGAIG AIDPAKVRVA SCSRFKIQCS DDDLIFELIH KHLARAFRAA1380
 1381 QDTIIQDSAA LAIQELLKIA GCEPSLAGNV VVLTPQEHVQ VNVSGSRRCG GNNEVKDRGQ1440
 1441 KLWDRFSNYV KELIAPCLTS RFQLPNVSDP GSAGPIYRPS MSFRRWLSYW IRKLTAFATG1500
 1501 SRVSIFAACR GIVRHDMQTA TYLLPYLVLD VVCHGTEAAR LSISEEILSV LDAAASENSG1560
 1561 VTINSFGVGQ SEVCVQAVFT LLDNLGQWVD DVKQGVALSS SLQSSGGRQV APKSKDQVSN1620
 1621 STTEQDHLLV QCKYVLELLL AIPKVTLARA SFRCQAYARS LMYLESHVRG KSGSLNPAAE1680
 1681 KTGIFENADV SSLMGIYSCL DEPDGLSGFA SLSKSLNLQD QLLINKKSGN WADVFTACEQ1740
 1741 ALQMEPTSVQ RHSDVLNCLL NMCHHQTMVT HVDGLISRVP EYKKTWCTQG VQAAWRLGKW1800
 1801 DLMDEYLDGA DAEGLLFSSS DSNASFDRDV AKILHAMMKK DQYSVAEGIA ISKQALIAPL1860
 1861 AAAGMDSYTR AYPFVVKLHL LRELEDFQAV LNGDSYLEKS FSTSDQVFSK AVDNWENRLR1920
 1921 FTQSSLWTRE PLLAFRRLVF GASGLGAQVG NCWLQYAKLC RLAGHYETAH RAILEAQASG1980
 1981 APNVHMEKAK LLWITKRSDS AIIELQQSLL NMPEGVVDST VISSINSLLM APPNPEPTVR2040
 2041 NTQSFKEKKD VAKTLLLYSK WIHHSGQKQK KDVLNLYTQV KELLPWEKGY FHLAKYYDEL2100
 2101 YVDARKCQQE SSVFSSAGSK KGSVSSNLST EKAGWDYLFK GMYFYAKALH SGHKNLFQAL2160
 2161 PRLLTLWFDF GTIYKTSGSA GNKELKSTHM KIMSLMRGCL KDLPTYQWLT VLPQLVSRIC2220
 2221 HQNADTVLMV KNIITSVLHQ FPQQGLWIMA AVSKSTVPAR REAAAEIIQG ARKGFNQSDR2280
 2281 GHNLFIQFAS LTDHFIKLCF HGGQPRSKVI NIATEFSALK RMMPLDIIMP IQQSLTISLP2340
 2341 AFHMNNNERH SASVFSGSDL PTISGIADEA EILSSLQRPK KIILLGNDGI EYPFLCKPKD2400
 2401 DLRKDARMME FTAMINRLLS KYPESRRRKL YIRTFAVAPL TEDCGLVEWV PHTRGLRHIL2460
 2461 QDIYISCGKF DRQKTNPQIK RIYDQCAVKK EYEMLKTKIL PMFPPVFHKW FLTTFSEPAA2520
 2521 WFRSRVAYAH TTAVWSMVGH IVGLGDRHGE NILFDSTSGD CVHVDFSCLF DKGLQLEKPE2580
 2581 LVPFRLTQNM IDGLGITGYE GIFMRVCEIT LTVLRTHRET LMSILETFIH DPLVEWTKSH2640
 2641 KSSGVEVQNP HAQRAISSIE ARLQGVVVGV PLPVEGQARR LIADAVSLEN LGKMYIWWMP2700
 2701 WF

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