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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|15242470
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCPKNQGLAD YVLQKKQEKH CLYWGCNNNN IRDFGRLSSE PRLNRKSRKT KCRNGRGDDF  60
   61 GLGGDVVLGN DFGQNNNSGQ GNDFGQGNDS GQGNDSLCLS ANLLWISLLP NSASDGHIFQ 120
  121 GEPELAQTEL SWVNSDFDTS FELSPHFILI FASSPKIGRV EAQDGYLPGK NLEVVLRGRV 180
  181 SCDPFDLMIC HRAETCYFGW QYFAKVALPW RGVGRALRAK PQVTLSVDPL VPRPKAVEPM 240
  241 MVSWCRAGDY YAVVGVGFVA CFRAASLRRT FHAGDVEFGR FCYRAMRMSP SNAIAAWRKR 300
  301 DSALPDEEVW AFHVEDVKMS CGGLAILFRC GSGLRLTLWV HCGQQEYASV VETDSTYFLG 360
  361 AALVSGLPCG CFEIDKNMQA RPRLICSVAC ELMLSAVDPS RPSLLQSRYK RLARCKASSK 420
  421 VDGRAMIRSS RNRETNINAF RRSPIAASSL IAMFETTFLN LSINVLSAPS IASSVEKCAP 480
  481 LIAMYIDLRK IFGSLWHDAF WRTSLLLPRS IVQARDRGVG FHRRQVPDVR QIVTARQIVG 540
  541 AEQVVAVLQV VAALQVVGAL QVVVVLQVVA PLQVVAVLQV VAVLQVVAVL QVAVILWATA 600
  601 RMLVNESYDK RRWSAASGLR VFWDWSSWRL LSILIFMRLG GAFSASKSLD LTLGSDLCCH 660
  661 KSVNPFDRSC FLSVEPIKDA IASSAAVAAR AVGAAGGYRL SPEPRLNRKS RKTKCRNGRG 720
  721 DDFGLGGDVG LGNDFRQGNN SGQGNDFGQG ARPMSNKRDH KPKGLSEYQE MKFVKAYRNV 780
  781 CDAKDSIDTL KDLSKIKGFG KYMVKLMQGY FVTGAASSEQ EALPGNRAGK KAKGSEPYKP 840
  841 QRNTAAYALL TLHRPEKGKG KAGLGTSKRE WYSGWSCMSK LIEKGLVVKF SNPAKYMLTV 900
  901 EGRNVADDLD PRSRGQSSIP AGPSSRAQEF LATDTGQVDL EGSRAKKFRS SSPCSSSISH 960
  961 ALKACSSSLA SDGTEGVTTI PRLPPLRFGE AFEEVYDVIL ILDDREQFAT KGHKYQQDEY1020
 1021 VLDFIVERKN VDDMRSSIMD NRYKDQKLRL QRSGIKKLIY ILEGDPNQSK TAESIKTACF1080
 1081 TTEILEGFDV VRTNGLGETL RKYGYLTKSI YQYYKSLVND DQRKVADSCP SYDDFVQRCP1140
 1141 DLGKMTISDV FAIQLMQVLS LAKPSFGFLS ATFFAIAVLD KYKTLRSLAS AYSKLDNVSA1200
 1201 QEEMLRNQSN NVICASASKN IYKLVVLNDL YSIVCPFDLF VV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle