YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42573279
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.64
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	32	0.62
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	237	0.93
Transmembrane Helix	238	261	0.85
Cytoplasmic	262	280	0.82
Transmembrane Helix	281	299	0.84
Non-Cytoplasmic	300	309	0.60
Transmembrane Helix	310	328	0.86
Cytoplasmic	329	342	0.78
Transmembrane Helix	343	365	0.91
Non-Cytoplasmic	366	376	0.79
Transmembrane Helix	377	395	0.55
Cytoplasmic	396	403	0.53
Transmembrane Helix	404	428	0.75
Non-Cytoplasmic	429	449	0.54
Transmembrane Helix	450	476	0.82
Cytoplasmic	477	494	0.55
Transmembrane Helix	495	517	0.91
Non-Cytoplasmic	518	527	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLAVASFRG NFGVLSQCSS CCSLQFQPFV AATSSLNFGQ TGTSRRKKDL KLERVFRKRE  60
   61 TLVRVTETQT EPEGNDDEDN KEGKESSADD PPTKIPTELN SQSTVVNEAP GNEEENKAQF 120
  121 SSQDGDKLEV SSGSPLPGVN PLQLDDSMRL PKETIDILRG QVFGFDTFFV TSQEPYEGGV 180
  181 LFKGNLRGKP ATSYEKIKTR MENNFGDQYK LFLLTNPEDD KPVAVVVPRR SLEPETTAVP 240
  241 EWFAAGSFGL VALFTLFLRN VPALQSDLLS AFDNLELLKD GLPGALVTAL VLGVHELGHI 300
  301 LVANSLGIKL GVPFFVPSWQ IGSFGAITRI KNIVAKREDL LKVAAAGPLA GFSLGLILFL 360
  361 IGLFVPPSDG IGVVVDASVF HESFLAGGIA KLLLGDALKE GTSISLNPLV IWAWAGLLIN 420
  421 GINSIPAGEL DGGKIAFSIW GRKTATRLTG ASIALLGLSA LFSDVAFYWV VLIFFLQRGP 480
  481 IAPLAEEITV PDDKYVSLGI LVLFLSLLVC LPYPFAFTGN EAMMIGL